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Integrated genome-wide analysis of genomic changes and gene regulation in human adrenocortical tissue samples.

作者信息

Gara Sudheer Kumar, Wang Yonghong, Patel Dhaval, Liu-Chittenden Yi, Jain Meenu, Boufraqech Myriem, Zhang Lisa, Meltzer Paul S, Kebebew Electron

机构信息

Endocrine Oncology Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.

Genetics Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.

出版信息

Nucleic Acids Res. 2015 Oct 30;43(19):9327-39. doi: 10.1093/nar/gkv908. Epub 2015 Oct 7.


DOI:10.1093/nar/gkv908
PMID:26446994
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4627080/
Abstract

To gain insight into the pathogenesis of adrenocortical carcinoma (ACC) and whether there is progression from normal-to-adenoma-to-carcinoma, we performed genome-wide gene expression, gene methylation, microRNA expression and comparative genomic hybridization (CGH) analysis in human adrenocortical tissue (normal, adrenocortical adenomas and ACC) samples. A pairwise comparison of normal, adrenocortical adenomas and ACC gene expression profiles with more than four-fold expression differences and an adjusted P-value < 0.05 revealed no major differences in normal versus adrenocortical adenoma whereas there are 808 and 1085, respectively, dysregulated genes between ACC versus adrenocortical adenoma and ACC versus normal. The majority of the dysregulated genes in ACC were downregulated. By integrating the CGH, gene methylation and expression profiles of potential miRNAs with the gene expression of dysregulated genes, we found that there are higher alterations in ACC versus normal compared to ACC versus adrenocortical adenoma. Importantly, we identified several novel molecular pathways that are associated with dysregulated genes and further experimentally validated that oncostatin m signaling induces caspase 3 dependent apoptosis and suppresses cell proliferation. Finally, we propose that there is higher number of genomic changes from normal-to-adenoma-to-carcinoma and identified oncostatin m signaling as a plausible druggable pathway for therapeutics.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f9b9/4627080/fb1137acb395/gkv908fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f9b9/4627080/feeff98ea8c5/gkv908fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f9b9/4627080/3215ee5f9656/gkv908fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f9b9/4627080/a25549a6bfb9/gkv908fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f9b9/4627080/7c3abdd7ab47/gkv908fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f9b9/4627080/aab748bd8aa3/gkv908fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f9b9/4627080/fb1137acb395/gkv908fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f9b9/4627080/feeff98ea8c5/gkv908fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f9b9/4627080/3215ee5f9656/gkv908fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f9b9/4627080/a25549a6bfb9/gkv908fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f9b9/4627080/7c3abdd7ab47/gkv908fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f9b9/4627080/aab748bd8aa3/gkv908fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f9b9/4627080/fb1137acb395/gkv908fig6.jpg

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[1]
Integrated genome-wide analysis of genomic changes and gene regulation in human adrenocortical tissue samples.

Nucleic Acids Res. 2015-10-30

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[3]
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[5]
Alterations of DNA methylation were associated with the rapid growth of cortisol-producing adrenocortical adenoma during pregnancy.

Clin Epigenetics. 2021-12-4

[6]
The Diagnostic, Prognostic and Therapeutic Role of miRNAs in Adrenocortical Carcinoma: A Systematic Review.

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[7]
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[8]
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Horm Metab Res. 2020-8

[9]
Past, Present and Future of Epigenetics in Adrenocortical Carcinoma.

Cancers (Basel). 2020-5-13

[10]
A scoping review and proposed workflow for multi-omic rare disease research.

Orphanet J Rare Dis. 2020-4-28

本文引用的文献

[1]
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J Natl Cancer Inst. 2014-9-12

[2]
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Oncol Rep. 2014-10

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MicroRNA-25 promotes gastric cancer migration, invasion and proliferation by directly targeting transducer of ERBB2, 1 and correlates with poor survival.

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J Clin Endocrinol Metab. 2013-12-11

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