Milles Sigrid, Mercadante Davide, Aramburu Iker Valle, Jensen Malene Ringkjøbing, Banterle Niccolò, Koehler Christine, Tyagi Swati, Clarke Jane, Shammas Sarah L, Blackledge Martin, Gräter Frauke, Lemke Edward A
Structural and Computational Biology Unit, Cell Biology and Biophysics Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstrasse 1, 69117 Heidelberg, Germany; University Grenoble Alpes, IBS, F-38044 Grenoble, France; CNRS, IBS, F-38044 Grenoble, France; CEA, IBS, F-38044 Grenoble, France.
Molecular Biomechanics group, HITS gGmbH, Schloß-Wolfsbrunnenweg 35, 69118 Heidelberg, Germany; IWR - Interdisciplinary Center for Scientific Computing, Im Neuenheimer Feld 368, 69120, Heidelberg, Germany.
Cell. 2015 Oct 22;163(3):734-45. doi: 10.1016/j.cell.2015.09.047. Epub 2015 Oct 8.
The mechanisms by which intrinsically disordered proteins engage in rapid and highly selective binding is a subject of considerable interest and represents a central paradigm to nuclear pore complex (NPC) function, where nuclear transport receptors (NTRs) move through the NPC by binding disordered phenylalanine-glycine-rich nucleoporins (FG-Nups). Combining single-molecule fluorescence, molecular simulations, and nuclear magnetic resonance, we show that a rapidly fluctuating FG-Nup populates an ensemble of conformations that are prone to bind NTRs with near diffusion-limited on rates, as shown by stopped-flow kinetic measurements. This is achieved using multiple, minimalistic, low-affinity binding motifs that are in rapid exchange when engaging with the NTR, allowing the FG-Nup to maintain an unexpectedly high plasticity in its bound state. We propose that these exceptional physical characteristics enable a rapid and specific transport mechanism in the physiological context, a notion supported by single molecule in-cell assays on intact NPCs.
内在无序蛋白质进行快速且高度选择性结合的机制是一个备受关注的课题,并且代表了核孔复合体(NPC)功能的核心范例,其中核转运受体(NTRs)通过与富含苯丙氨酸 - 甘氨酸的无序核孔蛋白(FG - Nups)结合而穿过NPC。结合单分子荧光、分子模拟和核磁共振,我们表明,如停流动力学测量所示,快速波动的FG - Nup构成了一组易于以接近扩散限制的结合速率与NTRs结合的构象。这是通过多个简约的低亲和力结合基序实现的,这些基序在与NTR结合时会快速交换,从而使FG - Nup在其结合状态下保持出乎意料的高可塑性。我们提出,这些特殊的物理特性在生理环境中实现了一种快速且特异性的转运机制,这一观点得到了对完整NPC进行的单分子细胞内检测的支持。