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棕尾伯劳(Lanius isabellinus)(雀形目,伯劳科)线粒体全基因组的测序与分析

Sequencing and analysis of the complete mitochondrial genome of Rufous-tailed Shrike, Lanius isabellinus (Passeriformes, Laniidae).

作者信息

Liu Fangqing, Bao Xinkang, Fan Yanan, Li Jiande

机构信息

a School of Life Science, Lanzhou University , Lanzhou , P. R. China.

出版信息

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Jul;27(4):2625-6. doi: 10.3109/19401736.2015.1041125. Epub 2015 Oct 12.

Abstract

The complete mitochondrial genome of the Rufous-tailed Shrike (Lanius isabellinus) was 16 819 bp in length. The GenBank accession number is KP995437 and the contents of A, T, C, and G are 31.1% (5234 bp), 25.5% (4293 bp), 28.7% (4826 bp), and 14.7% (2466 bp), respectively. Gene organization and length are similar to other species of birds. It comprises 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes and a control region. All protein-coding genes use the typical initiation codon ATG, except for COX1 that uses GTG. All the complete stop codons were co-incident with the Black-headed Gull (Chroicocephalus ridibundus) and the Grey-backed Shrike (Lanius tephronotus), except for ND2 that was terminated with TAG. In addition, the phylogenetic relationships of Passeriformes based on complete mitochondrial genome showed that genetic distance of Laniidae and Corvidae was closer than other species.

摘要

棕尾伯劳(Lanius isabellinus)的线粒体全基因组长度为16819bp。GenBank登录号为KP995437,A、T、C和G的含量分别为31.1%(5234bp)、25.5%(4293bp)、28.7%(4826bp)和14.7%(2466bp)。基因组织和长度与其他鸟类物种相似。它包括13个蛋白质编码基因、2个rRNA基因、22个tRNA基因和一个控制区。除COX1使用GTG外,所有蛋白质编码基因均使用典型的起始密码子ATG。除ND2以TAG终止外,所有完整的终止密码子均与红嘴鸥(Chroicocephalus ridibundus)和灰背伯劳(Lanius tephronotus)一致。此外,基于线粒体全基因组的雀形目系统发育关系表明,伯劳科和鸦科的遗传距离比其他物种更近。

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