Neumann Tobias, Danilov Denis, Wenzel Wolfgang
Institute of Nanotechnology, Karlsruhe Institute of Technology, PO Box 3640, D-76021, Karlsruhe, Germany.
J Comput Chem. 2015 Nov 15;36(30):2236-45. doi: 10.1002/jcc.24205. Epub 2015 Oct 13.
Molecular Dynamics (MD) and Monte Carlo (MC) based simulation methods are widely used to investigate molecular and nanoscale structures and processes. While the investigation of systems in MD simulations is limited by very small time steps, MC methods are often stifled by low acceptance rates for moves that significantly perturb the system. In many Metropolis MC methods with hard potentials, the acceptance rate drops exponentially with the number of uncorrelated, simultaneously proposed moves. In this work, we discuss a multiparticle Acceptance Rate Optimized Monte Carlo approach (AROMoCa) to construct collective moves with near unit acceptance probability, while preserving detailed balance even for large step sizes. After an illustration of the protocol, we demonstrate that AROMoCa significantly accelerates MC simulations in four model systems in comparison to standard MC methods. AROMoCa can be applied to all MC simulations where a gradient of the potential is available and can help to significantly speed up molecular simulations.
基于分子动力学(MD)和蒙特卡罗(MC)的模拟方法被广泛用于研究分子和纳米尺度的结构与过程。虽然MD模拟中系统的研究受非常小的时间步长限制,但MC方法常常因对系统产生显著扰动的移动接受率低而受到阻碍。在许多具有硬势的 metropolis MC方法中,接受率会随着不相关的同时提出的移动数量呈指数下降。在这项工作中,我们讨论了一种多粒子接受率优化蒙特卡罗方法(AROMoCa),以构建具有接近单位接受概率的集体移动,同时即使对于大步长也能保持细致平衡。在对该协议进行说明后,我们证明与标准MC方法相比,AROMoCa在四个模型系统中显著加速了MC模拟。AROMoCa可应用于所有可获得势梯度的MC模拟,并有助于显著加快分子模拟。