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采用构型冻结方案的非平衡候选蒙特卡罗模拟

Nonequilibrium Candidate Monte Carlo Simulations with Configurational Freezing Schemes.

作者信息

Giovannelli Edoardo, Gellini Cristina, Pietraperzia Giangaetano, Cardini Gianni, Chelli Riccardo

机构信息

Dipartimento di Chimica, Università di Firenze , Via della Lastruccia 3, I-50019 Sesto Fiorentino, Italy.

European Laboratory for Nonlinear Spectroscopy (LENS), Via Nello Carrara 1, I-50019 Sesto Fiorentino, Italy.

出版信息

J Chem Theory Comput. 2014 Oct 14;10(10):4273-83. doi: 10.1021/ct500340b.

Abstract

Nonequilibrium Candidate Monte Carlo simulation [Nilmeier et al., Proc. Natl. Acad. Sci. U.S.A. 2011, 108, E1009-E1018] is a tool devised to design Monte Carlo moves with high acceptance probabilities that connect uncorrelated configurations. Such moves are generated through nonequilibrium driven dynamics, producing candidate configurations accepted with a Monte Carlo-like criterion that preserves the equilibrium distribution. The probability of accepting a candidate configuration as the next sample in the Markov chain basically depends on the work performed on the system during the nonequilibrium trajectory and increases with decreasing such a work. It is thus strategically relevant to find ways of producing nonequilibrium moves with low work, namely moves where dissipation is as low as possible. This is the goal of our methodology, in which we combine Nonequilibrium Candidate Monte Carlo with Configurational Freezing schemes developed by Nicolini et al. (J. Chem. Theory Comput. 2011, 7, 582-593). The idea is to limit the configurational sampling to particles of a well-established region of the simulation sample, namely the region where dissipation occurs, while leaving fixed the other particles. This allows to make the system relaxation faster around the region perturbed by the finite-time switching move and hence to reduce the dissipated work, eventually enhancing the probability of accepting the generated move. Our combined approach enhances significantly configurational sampling, as shown by the case of a bistable dimer immersed in a dense fluid.

摘要

非平衡候选蒙特卡罗模拟[Nilmeier等人,《美国国家科学院院刊》2011年,108卷,E1009 - E1018页]是一种用于设计具有高接受概率的蒙特卡罗移动的工具,这些移动能够连接不相关的构型。此类移动通过非平衡驱动动力学生成,产生的候选构型依据类似蒙特卡罗的准则被接受,该准则能保持平衡分布。在马尔可夫链中接受候选构型作为下一个样本的概率基本上取决于在非平衡轨迹期间对系统所做的功,并且随着该功的减小而增加。因此,找到产生低功的非平衡移动的方法具有重要的策略意义,即找到耗散尽可能低的移动。这就是我们方法的目标,在该方法中,我们将非平衡候选蒙特卡罗与Nicolini等人开发的构型冻结方案(《化学理论与计算杂志》2011年,7卷,582 - 593页)相结合。其思路是将构型采样限制在模拟样本中一个已确定区域的粒子上,即发生耗散的区域,而让其他粒子保持固定。这使得系统在受有限时间切换移动扰动的区域周围能够更快地弛豫,从而减少耗散的功,最终提高接受所生成移动的概率。如浸没在稠密流体中的双稳态二聚体的情况所示,我们的组合方法显著增强了构型采样。

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