Raj Utkarsh, Kumar Himansu, Gupta Saurabh, Varadwaj Pritish Kumar
a Department of Bioinformatics , Indian Institute of Information Technology-Allahabad , CC2-4203, Jhalwa Campus, Deoghat, Allahabad , Uttar Pradesh 211012 , India.
J Biomol Struct Dyn. 2016 Oct;34(10):2115-29. doi: 10.1080/07391102.2015.1108870. Epub 2015 Nov 30.
Signal transducer and activator of transcription (STAT) proteins are latent cytoplasmic transcription factors that transduce signals from cytokines and growth factors to the nucleus and thereby regulate the expression of a variety of target genes. Although mutations of STATs have not been reported in human tumors but the activity of several members of the family, such as STAT1 and STAT5, is deregulated in a variety of human carcinoma. STAT1 and STAT5 share a structural similarity with a highly conserved SH2 domain which is responsible for the activation of STAT proteins on interaction with phosphotyrosine motifs for specific STAT-receptor contacts and STAT dimerization. The purpose of this study is to identify domain-specific dual inhibitors for both STAT1 and STAT5 proteins from a database of natural products and natural product-like compounds comprising of over 90,000 compounds. Virtual screening-based molecular docking was performed in order to find novel natural dual inhibitors. Further, the study was supported by the 50-ns molecular dynamics simulation for receptor-ligand complexes (STAT1-STOCK-1N-69677 and STAT5-STOCK-1N-69677). Analysis of molecular interactions in the SH2 domains of both STAT1 and STAT5 proteins with the ligand revealed few conserved amino acid residues which are responsible to stabilize the ligands within the binding pocket through bonded and non-bonded interactions. This study suggested that compound STOCK-1N-69677 might putatively act as a dual inhibitor of STAT1 and STAT5 receptors, through its binding to the SH2 domain.
信号转导子和转录激活子(STAT)蛋白是潜在的细胞质转录因子,可将细胞因子和生长因子的信号传导至细胞核,从而调节多种靶基因的表达。虽然在人类肿瘤中尚未报道STATs的突变,但该家族的几个成员,如STAT1和STAT5的活性,在多种人类癌症中失调。STAT1和STAT5与高度保守的SH2结构域具有结构相似性,该结构域负责在与特定STAT受体接触的磷酸酪氨酸基序相互作用以及STAT二聚化时激活STAT蛋白。本研究的目的是从包含90,000多种化合物的天然产物和天然产物类似物数据库中鉴定针对STAT1和STAT5蛋白的结构域特异性双重抑制剂。为了找到新型天然双重抑制剂,进行了基于虚拟筛选的分子对接。此外,该研究得到了受体-配体复合物(STAT1-STOCK-1N-69677和STAT5-STOCK-1N-69677)的50纳秒分子动力学模拟的支持。对STAT1和STAT5蛋白的SH2结构域与配体之间分子相互作用的分析揭示了一些保守的氨基酸残基,这些残基通过键合和非键合相互作用负责将配体稳定在结合口袋内。这项研究表明,化合物STOCK-1N-69677可能通过与SH2结构域结合而推定作为STAT1和STAT5受体的双重抑制剂。