Transplantation. 2015 Nov;99(11):2401-12. doi: 10.1097/TP.0000000000000913.
Genetic association studies of transplantation outcomes have been hampered by small samples and highly complex multifactorial phenotypes, hindering investigations of the genetic architecture of a range of comorbidities which significantly impact graft and recipient life expectancy. We describe here the rationale and design of the International Genetics & Translational Research in Transplantation Network. The network comprises 22 studies to date, including 16494 transplant recipients and 11669 donors, of whom more than 5000 are of non-European ancestry, all of whom have existing genomewide genotype data sets.
We describe the rich genetic and phenotypic information available in this consortium comprising heart, kidney, liver, and lung transplant cohorts.
We demonstrate significant power in International Genetics & Translational Research in Transplantation Network to detect main effect association signals across regions such as the MHC region as well as genomewide for transplant outcomes that span all solid organs, such as graft survival, acute rejection, new onset of diabetes after transplantation, and for delayed graft function in kidney only.
This consortium is designed and statistically powered to deliver pioneering insights into the genetic architecture of transplant-related outcomes across a range of different solid-organ transplant studies. The study design allows a spectrum of analyses to be performed including recipient-only analyses, donor-recipient HLA mismatches with focus on loss-of-function variants and nonsynonymous single nucleotide polymorphisms.
移植结果的基因关联研究因样本量小和多因素表型高度复杂而受到阻碍,这妨碍了对一系列共病的基因结构的研究,这些共病对移植物和受者的预期寿命有重大影响。我们在此描述国际移植遗传学与转化研究网络的基本原理和设计。该网络迄今包括22项研究,涵盖16494名移植受者和11669名供者,其中5000多名是非欧洲血统,他们都有现有的全基因组基因型数据集。
我们描述了这个由心脏、肾脏、肝脏和肺移植队列组成的联盟中可用的丰富基因和表型信息。
我们证明国际移植遗传学与转化研究网络有强大能力检测跨主要组织相容性复合体(MHC)区域等区域以及全基因组范围内的主要效应关联信号,这些信号涉及所有实体器官的移植结果,如移植物存活、急性排斥反应、移植后新发糖尿病,以及仅针对肾脏的移植肾功能延迟。
这个联盟的设计和统计学能力使其能够在一系列不同的实体器官移植研究中,对移植相关结果的基因结构提供开创性见解。该研究设计允许进行一系列分析,包括仅针对受者的分析、关注功能丧失变异和非同义单核苷酸多态性的供者 - 受者人类白细胞抗原(HLA)错配分析。