来自印度古吉拉特邦库奇小盐沼野生驴保护区盐渍沙漠微生物群的宏基因组序列。
Metagenomic sequence of saline desert microbiota from wild ass sanctuary, Little Rann of Kutch, Gujarat, India.
作者信息
Patel Rajesh, Mevada Vishal, Prajapati Dhaval, Dudhagara Pravin, Koringa Prakash, Joshi C G
机构信息
Department of Life Sciences, Hemchandracharya North Gujarat University, Patan, Gujarat, India.
Department of Biotechnology, Veer Narmad South Gujarat University, Surat, Gujarat, India.
出版信息
Genom Data. 2015 Jan 15;3:137-9. doi: 10.1016/j.gdata.2015.01.003. eCollection 2015 Mar.
We report Metagenome from the saline desert soil sample of Little Rann of Kutch, Gujarat State, India. Metagenome consisted of 633,760 sequences with size 141,307,202 bp and 56% G + C content. Metagenome sequence data are available at EBI under EBI Metagenomics database with accession no. ERP005612. Community metagenomics revealed total 1802 species belonged to 43 different phyla with dominating Marinobacter (48.7%) and Halobacterium (4.6%) genus in bacterial and archaeal domain respectively. Remarkably, 18.2% sequences in a poorly characterized group and 4% gene for various stress responses along with versatile presence of commercial enzyme were evident in a functional metagenome analysis.
我们报告了来自印度古吉拉特邦库奇小兰恩盐碱沙漠土壤样本的宏基因组。该宏基因组由633,760个序列组成，大小为141,307,202碱基对，G + C含量为56%。宏基因组序列数据可在EBI的EBI宏基因组数据库中获取，登录号为ERP005612。群落宏基因组学显示，共有1802个物种属于43个不同的门，在细菌和古菌域中分别以海杆菌属（48.7%）和嗜盐杆菌属（4.6%）为主。值得注意的是，在功能宏基因组分析中，一个特征不明确的组中有18.2%的序列以及4%的各种应激反应基因，同时还广泛存在商业酶。
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