Kim Young-Ok, Park In-Suk, Park Sooyeon, Nam Bo-Hye, Park Ji-Min, Kim Dong-Gyun, Yoon Jung-Hoon
Biotechnology Research Division, National Fisheries Research and Development Institute (NFRDI), Gijang, Busan 619-705, South Korea.
Department of Food Science and Biotechnology, Sungkyunkwan University, Jangan-gu, Suwon, South Korea.
Int J Syst Evol Microbiol. 2016 Jan;66(1):296-301. doi: 10.1099/ijsem.0.000715. Epub 2015 Oct 26.
A Gram-stain-negative, non-spore-forming, non-flagellated and coccoid, ovoid or rod-shaped bacterial strain, RA1-3T, was isolated from a sea squirt (Halocynthia roretzi) collected from the South Sea, South Korea, and subjected to a taxonomic study using a polyphasic approach. Strain RA1-3T grew optimally at 25 °C, at pH 7.0-8.0 and in the presence of 2.0-3.0 % (w/v) NaCl. Neighbour-joining, maximum-likelihood and maximum-parsimony phylogenetic trees based on 16S rRNA gene sequences revealed that strain RA1-3T clustered with the type strains of three species of the genus Octadecabacter, showing 97.54-98.41 % 16S rRNA gene sequence similarity. Sequence similarities to other recognized species were less than 96.97 %. Strain RA1-3T contained Q-10 as the predominant ubiquinone and C18 : 1ω7c as the major fatty acid. The major polar lipids of strain RA1-3T were phosphatidylcholine, phosphatidylglycerol, one unidentified aminolipid and one unidentified lipid. The DNA G+C content of strain RA1-3T was 56 mol% and DNA-DNA relatedness values with the type strains of Octadecabacter temperatus, Octadecabacter antarcticus and Octadecabacter arcticus were 13-24 %. The differential phenotypic properties, together with the phylogenetic and genetic distinctiveness, revealed that strain RA1-3T is separated from other recognized species of the genus Octadecabacter. On the basis of the data presented, strain RA1-3T is considered to represent a novel species of the genus Octadecabacter, for which the name Octadecabacter ascidiaceicola sp. nov. is proposed. The type strain is RA1-3T ( = KCTC 42605T = CECT 8868T).
从韩国南海采集的海鞘(柄海鞘)中分离出一株革兰氏染色阴性、不形成芽孢、无鞭毛、呈球状、卵形或杆状的细菌菌株RA1-3T,并采用多相分类法对其进行分类学研究。菌株RA1-3T在25 °C、pH值7.0 - 8.0以及2.0 - 3.0 %(w/v)NaCl存在的条件下生长最佳。基于16S rRNA基因序列构建的邻接法、最大似然法和最大简约法系统发育树显示,菌株RA1-3T与十八杆菌属三个种的模式菌株聚类在一起,16S rRNA基因序列相似性为97.54 - 98.41 %。与其他已确认种的序列相似性低于96.97 %。菌株RA1-3T以Q-10作为主要泛醌,以C18 : 1ω7c作为主要脂肪酸。菌株RA1-3T的主要极性脂类为磷脂酰胆碱、磷脂酰甘油以及一种未鉴定的氨基脂类和一种未鉴定的脂类。菌株RA1-3T的DNA G+C含量为56 mol%,与嗜温十八杆菌、南极十八杆菌和北极十八杆菌模式菌株的DNA-DNA杂交值为13 - 24 %。其不同的表型特征,以及系统发育和遗传独特性表明,菌株RA1-3T与十八杆菌属其他已确认的种不同。根据所提供的数据,菌株RA1-3T被认为代表十八杆菌属的一个新种,为此提出新种名为海鞘十八杆菌(Octadecabacter ascidiaceicola sp. nov.)。模式菌株为RA1-3T( = KCTC 42605T = CECT 8868T)。