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一个地中海蚯蚓家族(环节动物门:链胃蚓科)的系统基因组分析。

Phylogenomic analyses of a Mediterranean earthworm family (Annelida: Hormogastridae).

作者信息

Novo Marta, Fernández Rosa, Andrade Sónia C S, Marchán Daniel F, Cunha Luis, Díaz Cosín Darío J

机构信息

Cardiff School of Biosciences, Cardiff University, BIOSI 1, Museum Avenue, Cardiff CF10 3AT, UK; Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA 02138, USA; Departamento de Zoología y Antropología Física, Facultad de Biología, Universidad Complutense de Madrid, C/ José Antonio Nováis 2, 28040 Madrid, Spain.

Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA 02138, USA.

出版信息

Mol Phylogenet Evol. 2016 Jan;94(Pt B):473-478. doi: 10.1016/j.ympev.2015.10.026. Epub 2015 Oct 31.

Abstract

Earthworm taxonomy and evolutionary biology remain a challenge because of their scarce distinct morphological characters of taxonomic value, the morphological convergence by adaptation to the uniformity of the soil where they inhabit, and their high plasticity when challenged with stressful or new environmental conditions. Here we present a phylogenomic study of the family Hormogastridae, representing also the first piece of work of this type within earthworms. We included seven transcriptomes of the group representing the main lineages as previously-described, analysed in a final matrix that includes twelve earthworms and eleven outgroups. While there is a high degree of gene conflict in the generated trees that obscure some of the internal relationships, the origin of the family is well resolved: the hormogastrid Hemigastrodrilus appears as the most ancestral group, followed by the ailoscolecid Ailoscolex, therefore rejecting the validity of the family Ailoscolecidae. Our results place the origin of hormogastrids in Southern France, as previously hypothesised.

摘要

由于蚯蚓具有稀缺的具有分类学价值的明显形态特征、因适应所栖息土壤的一致性而导致的形态趋同现象,以及在面临压力或新环境条件时具有的高度可塑性,蚯蚓的分类学和进化生物学仍然是一项挑战。在此,我们展示了对链胃蚓科的系统基因组学研究,这也是蚯蚓领域此类研究的首项工作。我们纳入了该类群代表主要谱系的七个转录组,如先前所述,在一个包含十二条蚯蚓和十一个外类群的最终矩阵中进行分析。虽然生成的树中存在高度的基因冲突,模糊了一些内部关系,但该科的起源已得到很好的解析:链胃蚓属的半胃蚓被视为最原始的类群,其次是艾氏蚓科的艾氏蚓,因此否定了艾氏蚓科的有效性。正如之前所假设的,我们的研究结果表明链胃蚓科起源于法国南部。

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