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[用于病毒鉴定与发现的小RNA深度测序进展]

[Advance in Deep Sequencing of Small RNAs for Virus Identification and Discovery].

作者信息

Li Yang, Wang Hao, Ma Xuejun

出版信息

Bing Du Xue Bao. 2015 Jul;31(4):457-62.

Abstract

Small RNAs (sRNA) are produced abundantly in either plants or animals and function in regulating gene expression or in defense against virus infection. Deep sequencing of small RNAs is an emerging technology in virus identification and de novo assembly of virus genomes and is demonstrated to be an effective method to discover new viruses and monitor virus variation. A significant number of viruses from plants, invertebrates and human cells has been successfully identified using this technology. In this paper, we summarized the principle, operation process and latest advances of sRNA deep sequencing We also showed the feasibility of sRNA deep sequencing by bioinformatic analysis using sRNA deep sequencing dataset public available for the detection of viruses.

摘要

小RNA(sRNA)在植物或动物中大量产生,在调节基因表达或抵御病毒感染方面发挥作用。小RNA深度测序是病毒鉴定和病毒基因组从头组装中的一项新兴技术,被证明是发现新病毒和监测病毒变异的有效方法。利用该技术已成功鉴定出大量来自植物、无脊椎动物和人类细胞的病毒。在本文中,我们总结了sRNA深度测序的原理、操作流程和最新进展。我们还通过生物信息学分析,利用公开可用的sRNA深度测序数据集展示了sRNA深度测序在病毒检测方面的可行性。

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