Li Jing-Jing, Hu Zi-Min, Liu Ruo-Yu, Zhang Jie, Liu Shao-Lun, Duan De-Lin
Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China; College of Earth Science, University of Chinese Academy of Sciences, Beijing 100049, China.
Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China.
Mol Phylogenet Evol. 2016 Jan;94(Pt B):463-472. doi: 10.1016/j.ympev.2015.10.029. Epub 2015 Oct 31.
The North Atlantic red alga Mastocarpus stellatus is characterized by two life histories (sexual-type and direct-type), which correspond to two geographically isolated breeding groups. These features enable M. stellatus to be an interesting model to investigate how environmental shift and apomictic propagation have influenced its population genetic structure, historical demography and distribution dynamic. To test these ideas, we obtained 456 specimens from 15 locations on both sides of the North Atlantic and sequenced portion of the nuclear internal transcribed spacer (ITS), mitochondrial cox2-3 region (COX) and plastid RuBisCo spacer (RLS). Median-joining networks and ML trees inferred from COX and RLS consistently revealed two gene lineages (mtDNA: CN, CS; cpDNA: RN, RS). The concatenated COX and RLS markers yielded three cytotypes: a northern CN-RN, a southern CS-RS and a mixed cytotype CS-RN, which enabled us to roughly separate samples into D (direct-type life-cycle) and S (sexual-type life-cycle) groups (northern CN-RN and mixed cytotype CS-RN=D; southern CS-RS=S). Pairwise FST analysis of the D group revealed a high level of genetic differentiation both along European coasts and across the Atlantic basin. Bayesian skyline plots (BSPs) and IMa analyses indicated that M. stellatus underwent slight demographic expansion at the late-Pleistocene, with the beginning of divergence between lineages dating to c. 0.189Ma (95%HPD: 0.083-0.385Ma). IMa analyses also revealed asymmetric genetic exchange among European populations and a predominant postglacial trans-Atlantic migration from Norway and Galway Bay to North America. Our study highlights the importance of phylogeographic approaches to discover the imprints of climate change, life histories and gene flow in driving population genetic connectivity and biogeographic distribution of intertidal seaweeds in the North Atlantic.
北大西洋红藻星状美芒藻具有两种生活史(有性型和直接型),这两种生活史分别对应两个地理隔离的繁殖群体。这些特征使得星状美芒藻成为一个有趣的模型,可用于研究环境变化和无融合生殖如何影响其种群遗传结构、历史种群动态和分布动态。为了验证这些想法,我们从北大西洋两岸的15个地点采集了456个样本,并对核内转录间隔区(ITS)、线粒体细胞色素氧化酶亚基2-3区域(COX)和质体核酮糖-1,5-二磷酸羧化酶/加氧酶间隔区(RLS)的部分序列进行了测序。从中位数连接网络以及从COX和RLS推断出的最大似然树一致显示出两个基因谱系(线粒体DNA:CN、CS;叶绿体DNA:RN、RS)。COX和RLS标记的串联产生了三种细胞类型:北方的CN-RN、南方的CS-RS以及混合细胞类型CS-RN,这使我们能够大致将样本分为D(直接型生命周期)和S(有性型生命周期)组(北方的CN-RN和混合细胞类型CS-RN = D;南方的CS-RS = S)。对D组的成对FST分析显示,在欧洲海岸沿线和跨大西洋盆地都存在高度的遗传分化。贝叶斯天际线图(BSP)和IMa分析表明,星状美芒藻在晚更新世经历了轻微的种群扩张,谱系之间的分化开始时间约为0.189Ma(95%HPD:0.083 - 0.385Ma)。IMa分析还揭示了欧洲种群之间不对称的基因交流,以及冰期后从挪威和戈尔韦湾到北美的主要跨大西洋迁移。我们的研究强调了系统发育地理学方法对于揭示气候变化、生活史和基因流在驱动北大西洋潮间带海藻种群遗传连通性和生物地理分布方面印记的重要性。