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从北极高纬度地区冰川冰芯中分离出的细菌的分类特征及生物潜力

Taxonomic characterization and the bio-potential of bacteria isolated from glacier ice cores in the High Arctic.

作者信息

Singh Purnima, Singh Shiv Mohan, Roy Utpal

机构信息

Birla Institute of Technology and Science, Pilani-K.K. Birla Goa Campus, Zuarinagar, Goa-403726, India.

National Centre for Antarctic and Ocean Research, Ministry of Earth Sciences, Vasco-da-Gama, Goa-403804, India.

出版信息

J Basic Microbiol. 2016 Mar;56(3):275-85. doi: 10.1002/jobm.201500298. Epub 2015 Nov 16.

DOI:10.1002/jobm.201500298
PMID:26567474
Abstract

Glacier ice and firn cores have ecological and biotechnological importance. The present study is aimed at characterizing bacteria in crustal ice cores from Svalbard, the Arctic. Counts of viable isolates ranged from 10 to 7000 CFU/ml (mean 803 CFU/ml) while the total bacterial numbers ranged from 7.20 × 10(4) to 2.59 × 10(7)  cells ml(-1) (mean 3.12 × 10(6)  cells ml(-1) ). Based on 16S rDNA sequence data, the identified species belonged to seven species, namely Bacillus barbaricus, Pseudomonas orientalis, Pseudomonas oryzihabitans, Pseudomonas fluorescens, Pseudomonas syncyanea, Sphingomonas dokdonensis, and Sphingomonas phyllosphaerae, with a sequence similarity ranging between 93.5 and 99.9% with taxa present in the database. The isolates exhibited unique phenotypic properties, and three isolates (MLB-2, MLB-5, and MLB-9) are novel species, yet to be described. To the best of our knowledge, this is the first report on characterization of cultured bacterial communities from Svalbard ice cores. We conclude that high lipase, protease, cellulase, amylase, and urease activities expressed by most of the isolates provide a clue to the potential industrial applications of these organisms. These microbes, producing cold-adapted enzymes may provide an opportunity for biotechnological research.

摘要

冰川冰和粒雪芯具有生态和生物技术重要性。本研究旨在对北极斯瓦尔巴德地壳冰芯中的细菌进行特征描述。可培养分离株的数量范围为10至7000 CFU/ml(平均803 CFU/ml),而细菌总数范围为7.20×10⁴至2.59×10⁷ 个细胞/ml(平均3.12×10⁶ 个细胞/ml)。基于16S rDNA序列数据,鉴定出的物种属于七个种,即野蛮芽孢杆菌、东方假单胞菌、栖稻假单胞菌、荧光假单胞菌、蓝假单胞菌、独岛鞘氨醇单胞菌和叶鞘氨醇单胞菌,与数据库中存在的分类单元的序列相似性在93.5%至99.9%之间。这些分离株表现出独特的表型特性,其中三个分离株(MLB - 2、MLB - 5和MLB - 9)是尚未描述的新物种。据我们所知,这是关于斯瓦尔巴德冰芯中培养细菌群落特征描述的首次报告。我们得出结论,大多数分离株所表现出的高脂肪酶、蛋白酶、纤维素酶、淀粉酶和脲酶活性为这些微生物的潜在工业应用提供了线索。这些产生低温适应酶的微生物可能为生物技术研究提供机会。

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