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粗粒化力场的可转移性和非键合函数形式——在线性烷烃上的测试

Transferability and nonbond functional form of coarse grained force field - tested on linear alkanes.

作者信息

Cao Fenglei, Sun Huai

机构信息

School of Chemistry and Chemical Engineering and Key Laboratory of Scientific and Engineering Computing of Ministry of Education, Shanghai Jiao Tong University , Shanghai 200240, China.

State Key Laboratory of Inorganic Synthesis & Preparative Chemistry, College of Chemistry, Jilin University , Changchun, Jilin 130012, China.

出版信息

J Chem Theory Comput. 2015 Oct 13;11(10):4760-9. doi: 10.1021/acs.jctc.5b00573. Epub 2015 Sep 15.

Abstract

Whether or not a coarse grained force field (CGFF) can be made to be transferrable is an important question to be addressed. By comparing potential energy with potential of mean force (PMF) of a molecular dimer, we proposed to use a free energy function (FE-12-6) with the parameters in entropic and energetic terms explicitly to represent the nonbond interactions in CGFF. Although the FE-12-6 function cannot accurately describe the PMF curves, a cancelation of short radii and strong repulsion makes the function a good approximation. For nonpolar molecules represented by linear alkanes, FE-12-6 is demonstrated to be highly effective in representing the nonbond interactions in CGFF. The force field parameters are well transferrable among different alkane molecules, in different thermodynamic states and for predicting various thermodynamic properties including heats of vaporization, vapor-liquid-equilibrium coexistence curves, surface tensions, and liquid densities.

摘要

粗粒化力场(CGFF)能否具有可转移性是一个有待解决的重要问题。通过将分子二聚体的势能与平均力势(PMF)进行比较,我们建议使用一个自由能函数(FE - 12 - 6),其熵项和能量项的参数明确,以表示CGFF中的非键相互作用。尽管FE - 12 - 6函数不能准确描述PMF曲线,但短半径和强排斥的抵消使该函数成为一个很好的近似。对于由线性烷烃表示的非极性分子,FE - 12 - 6在表示CGFF中的非键相互作用方面被证明是非常有效的。力场参数在不同的烷烃分子之间、不同的热力学状态下以及预测各种热力学性质(包括汽化热、气液平衡共存曲线、表面张力和液体密度)时具有良好的可转移性。

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