Stare Jernej, Hadži Dušan
National Institute of Chemistry, Hajdrihova 19, 1000 Ljubljana, Slovenia.
J Chem Theory Comput. 2014 Apr 8;10(4):1817-23. doi: 10.1021/ct500167n.
The distance of ∼2.49 Å separating the carboxylic OH oxygen from the water oxygen atom in the α-polymorph of crystalline oxalic acid dihydrate is by ∼0.1 Å shorter than the average distance in carboxylic acid monohydrates. It is also by ∼0.2 Å shorter than the corresponding distance presently calculated for the heterotrimer consisting of one acid and two water molecules. The large difference between RO···O in the heterotrimer and in the crystal is attributed to the cooperative effect in the latter; this is supported by calculations carried out on clusters constituted of an increasing number of acid and water molecules. The present DFT calculations with geometry optimization include seven isolated model clusters, the largest of which contains five acid and eight water molecules. The RO···O of the short hydrogen bond shortens progressively with increasing the number of cluster constituents; in the largest cluster, it reaches 2.50 Å. This is remarkably close to both the experimental distance as well as to the distance obtained by the periodic DFT calculation. The electronic effects were studied by Natural Bond Orbital analysis, revealing an enhancement of hydrogen bonding on extending the network by increased polarization of the carbonyl group and by the increased delocalization interaction between the lone electron pair on the acceptor oxygen atom and the OH antibond orbital. The formation of circular motifs appears to be the most important factor in the cooperative shortening of the hydrogen bonds. In agreement with the measured hydrogen bond distances, inspection of the electron density reveals a notable difference in hydrogen bond shrinking tendency between the two known polymorphs of the title system.
在结晶草酸二水合物的α-多晶型物中,羧酸羟基氧与水分子氧原子之间约2.49 Å的距离比羧酸一水合物中的平均距离短约0.1 Å。它也比目前为一个酸分子和两个水分子组成的异三聚体计算出的相应距离短约0.2 Å。异三聚体和晶体中R-O···O的巨大差异归因于后者中的协同效应;由越来越多的酸分子和水分子组成的团簇的计算结果支持了这一点。目前进行几何优化的密度泛函理论(DFT)计算包括七个孤立的模型团簇,其中最大的团簇包含五个酸分子和八个水分子。短氢键的R-O···O随着团簇组成成分数量的增加而逐渐缩短;在最大的团簇中,它达到2.50 Å。这与实验距离以及周期性DFT计算得到的距离都非常接近。通过自然键轨道分析研究了电子效应,结果表明随着网络的扩展,通过羰基极化的增加以及受体氧原子上的孤电子对与OH反键轨道之间离域相互作用的增加,氢键增强。圆形基序的形成似乎是氢键协同缩短的最重要因素。与测得的氢键距离一致,对电子密度的检查揭示了标题体系两种已知多晶型物之间氢键收缩趋势的显著差异。