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越南芽孢杆菌菌株UCD-SED5(厚壁菌门)的基因组序列草图

Draft Genome Sequence of Bacillus vietnamensis Strain UCD-SED5 (Phylum Firmicutes).

作者信息

Lee Ruth D, Jospin Guillaume, Lang Jenna M, Eisen Jonathan A, Coil David A

机构信息

University of California Davis Genome Center, Davis, California, USA.

University of California Davis Genome Center, Davis, California, USA University of California Davis, Department of Evolution and Ecology, Department of Medical Microbiology and Immunology, Davis, California, USA

出版信息

Genome Announc. 2015 Nov 19;3(6):e01376-15. doi: 10.1128/genomeA.01376-15.

Abstract

Here, we present the draft genome sequence of Bacillus vietnamensis UCD-SED5 (phylum Firmicutes). This strain was isolated from sediment surrounding Zostera marina roots near the UC Davis Bodega Marine Laboratory (Bodega Bay, California) and represents the second genome of this species. The assembly consists of 4,325,707 bp, in 108 contigs.

摘要

在此,我们展示了越南芽孢杆菌UCD - SED5(厚壁菌门)的基因组序列草图。该菌株是从加利福尼亚州博德加湾的加州大学戴维斯分校博德加海洋实验室附近的大叶藻根部周围沉积物中分离得到的,代表了该物种的第二个基因组。该组装序列由4,325,707个碱基对组成,分布在108个重叠群中。

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本文引用的文献

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Swabs to genomes: a comprehensive workflow.从拭子到基因组:一个全面的工作流程。
PeerJ. 2015 May 14;3:e960. doi: 10.7717/peerj.960. eCollection 2015.
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An integrated pipeline for de novo assembly of microbial genomes.用于从头组装微生物基因组的集成管道。
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