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光谱学、热力学和动力学的通用微扰方法:方法背景与基准研究

General Perturbative Approach for Spectroscopy, Thermodynamics, and Kinetics: Methodological Background and Benchmark Studies.

作者信息

Bloino Julien, Biczysko Malgorzata, Barone Vincenzo

机构信息

Scuola Normale Superiore, piazza dei Cavalieri 7, I-56126 Pisa, Italy.

Consiglio Nazionale delle Ricerche, Istituto di Chimica dei Composti Organometallici (CNR-ICCOM), UOS di Pisa, Via G. Moruzzi, 1 I-56124 Italy.

出版信息

J Chem Theory Comput. 2012 Mar 13;8(3):1015-36. doi: 10.1021/ct200814m. Epub 2012 Feb 29.

Abstract

A general second-order perturbative approach based on resonance- and threshold-free computations of vibrational properties is introduced and validated. It starts from the evaluation of accurate anharmonic zero-point vibrational energies for semirigid molecular systems, in a way that avoids any singularity. Next, the degeneracy corrected second-order perturbation theory (DCPT2) is extended to a hybrid version (HDCPT2), allowing for reliable computations even in cases where the original formulation faces against severe problems, including also an automatic treatment of internal rotations through the hindered-rotor model. These approaches, in conjunction with the so-called simple perturbation theory (SPT) reformulated to treat consistently both energy minima and transition states, allow one to evaluate degeneracy-corrected partition functions further used to obtain vibrational contributions to properties like enthalpy, entropy, or specific heat. The spectroscopic accuracy of the HDCPT2 model has been also validated by computing anharmonic vibrational frequencies for a number of small-to-medium size, closed- and open-shell, molecular systems, within an accuracy close to that of well established but threshold-dependent perturbative-variational models. The reliability of the B3LYP/aug-N07D model for anharmonic computations is also highlighted, with possible improvements provided by the B2PLYP/aug-cc-pVTZ models or by hybrid schemes. On a general grounds, the overall approach proposed in the present work is able to provide the proper accuracy to support experimental investigations even for large molecular systems of biotechnological interest in a fully automated manner, without any ad hoc scaling procedure. This means a fully ab initio evaluation of thermodynamic and spectroscopic properties with an overall accuracy of about, or better than, 1 kJ mol(-1), 1 J mol(-1) K(-1) and 10 cm(-1) for enthalpies, entropies, and vibrational frequencies, respectively.

摘要

介绍并验证了一种基于振动特性的无共振和无阈值计算的通用二阶微扰方法。它从评估半刚性分子系统精确的非谐零点振动能开始,采用避免任何奇点的方式。接下来,将简并校正二阶微扰理论(DCPT2)扩展为混合版本(HDCPT2),即使在原始公式面临严重问题的情况下也能进行可靠计算,包括通过受阻转子模型自动处理内旋转。这些方法与重新制定以一致处理能量极小值和过渡态的所谓简单微扰理论(SPT)相结合,使人们能够评估简并校正的配分函数,进而用于获得对诸如焓、熵或比热等性质的振动贡献。HDCPT2模型的光谱精度也通过计算许多中小尺寸、闭壳层和开壳层分子系统的非谐振动频率得到了验证,其精度接近已确立但依赖阈值的微扰变分模型。还强调了B3LYP/aug-N07D模型用于非谐计算的可靠性,B2PLYP/aug-cc-pVTZ模型或混合方案可能会提供改进。一般来说,本工作中提出的整体方法能够以完全自动化的方式为即使是具有生物技术意义的大分子系统的实验研究提供适当的精度,而无需任何特殊的缩放程序。这意味着分别对热力学和光谱性质进行完全从头算评估,对于焓、熵和振动频率,整体精度约为或优于1 kJ mol⁻¹、1 J mol⁻¹ K⁻¹和10 cm⁻¹。

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