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利用比萨传统和显式相关复合方案(PCS和PCS-F12)获得气相中鸟嘌呤互变异构体的精确结构和光谱参数。

Accurate Structures and Spectroscopic Parameters of Guanine Tautomers in the Gas Phase by the Pisa Conventional and Explicitly Correlated Composite Schemes (PCS and PCS-F12).

作者信息

Barone Vincenzo, Di Grande Silvia, Lazzari Federico, Mendolicchio Marco

机构信息

Scuola Normale Superiore, Piazza dei Cavalieri 7, Pisa 56126, Italy.

Scuola Superiore Meridionale, Largo San Marcellino 10, Napoli 80138, Italy.

出版信息

J Phys Chem A. 2023 Aug 17;127(32):6771-6778. doi: 10.1021/acs.jpca.3c03999. Epub 2023 Aug 3.

DOI:10.1021/acs.jpca.3c03999
PMID:37535450
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10440789/
Abstract

A general strategy for the accurate computation of structural and spectroscopic properties of biomolecule building blocks in the gas phase is proposed and validated for tautomeric equilibria. The main features of the new model are the inclusion of core-valence correlation in geometry optimizations by a double hybrid functional and the systematic use of wave-function composite methods in conjunction with cc-pVZ-F12 basis sets with separate extrapolation of MP2 and post-MP2 contributions. The resulting Pisa composite scheme employing conventional (PCS) or explicitly correlated (PCS-F12) approaches is applied to the challenging problem of guanine tautomers in the gas phase. The results are in remarkable agreement with the experimental structures, relative stabilities, and spectroscopic signatures of different tautomers. The accuracy of the results obtained at reasonable cost by means of black-box parameter-free approaches paves the way toward systematic investigations of other molecular bricks of life also by non-specialists.

摘要

提出了一种用于精确计算气相中生物分子构建块的结构和光谱性质的通用策略,并针对互变异构平衡进行了验证。新模型的主要特点是在几何优化中通过双杂化泛函包含芯价相关,并系统地使用波函数复合方法结合cc-pVZ-F12基组,并对MP2和MP2后贡献进行单独外推。由此产生的采用传统(PCS)或显式相关(PCS-F12)方法的比萨复合方案被应用于气相中鸟嘌呤互变异构体这一具有挑战性的问题。结果与不同互变异构体的实验结构、相对稳定性和光谱特征显著一致。通过无参数黑箱方法以合理成本获得的结果的准确性为非专业人员对生命的其他分子构建块进行系统研究铺平了道路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/87e9/10440789/3ee8b1d37864/jp3c03999_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/87e9/10440789/5916680d89e0/jp3c03999_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/87e9/10440789/3ee8b1d37864/jp3c03999_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/87e9/10440789/5916680d89e0/jp3c03999_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/87e9/10440789/3ee8b1d37864/jp3c03999_0003.jpg

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本文引用的文献

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2
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Accuracy Meets Feasibility for the Structures and Rotational Constants of the Molecular Bricks of Life: A Joint Venture of DFT and Wave-Function Methods.
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Reliable Gas Phase Reaction Rates at Affordable Cost by Means of the Parameter-Free JunChS-F12 Model Chemistry.通过无参数 JunChS-F12 模型化学以可负担的成本获得可靠的气相反应速率。
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