Májer Imre, Hajihosseini Amirhossein, Becskei Attila
Computational and Systems Biology, Biozentrum, University of Basel, Klingelbergstr. 50/70, Basel, Switzerland.
Phys Biol. 2015 Nov 24;12(6):066011. doi: 10.1088/1478-3975/12/6/066011.
Bistability underlies cellular memory and maintains alternative differentiation states. Bistability can emerge only if its parameter range is either physically realizable or can be enlarged to become realizable. We derived a general rule and showed that the bistable range of a reaction parameter is maximized by a pair of other parameters in any gene regulatory network provided they satisfy a general condition. The resulting analytical expressions revealed whether or not such reaction pairs are present in prototypical positive feedback loops. They are absent from the feedback loop enclosed by protein dimers but present in both the toggle-switch and the feedback circuit inhibited by sequestration. Sequestration can generate bistability even at narrow feedback expression range at which cooperative binding fails to do so, provided inhibition is set to an optimal value. These results help to design bistable circuits and cellular reprogramming and reveal whether bistability is possible in gene networks in the range of realistic parameter values.
双稳态是细胞记忆的基础,并维持着不同的分化状态。只有当双稳态的参数范围在物理上是可实现的,或者可以扩大到可实现时,双稳态才会出现。我们推导出了一个通用规则,并表明在任何基因调控网络中,只要一对其他参数满足一个通用条件,反应参数的双稳态范围就会最大化。由此得到的解析表达式揭示了在典型的正反馈回路中是否存在这样的反应对。在由蛋白质二聚体构成的反馈回路中不存在这样的反应对,但在拨动开关和受隔离抑制的反馈回路中都存在。只要将抑制设置为最佳值,即使在协同结合无法产生双稳态的狭窄反馈表达范围内,隔离也能产生双稳态。这些结果有助于设计双稳态电路和细胞重编程,并揭示在现实参数值范围内基因网络中双稳态是否可能存在。