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sp. nov.,一种从岩石山坡土壤中分离出的新型细菌。

sp. nov., a novel bacterium isolated from soil of a rocky hillside.

作者信息

Sun Joo Eun, Jin Lee Jae, Kang Myung-Suk, Lim Sangyong, Jeong Sun-Wook, Bit Kim Eun, Hwa Jeon Seon, Srinivasan Sathiyaraj, Kyum Kim Myung

机构信息

Department of Bio & Environmental Technology, College of Natural Science, Seoul Women's University, Seoul 139-774, Korea.

Microorganism Resources Division, National Institute of Biological Resources, Incheon 404-107, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2016 Feb;66(2):1003-1008. doi: 10.1099/ijsem.0.000825. Epub 2015 Dec 7.

Abstract

Three Gram-stain-positive, catalase- and oxidase-positive coccus- or rod-shaped bacterial strains, designated BM2, BM4 and BM5, were isolated from soil in South Korea. They showed strong resistance to gamma radiation with a value of 9 kGy but weak UVC resistance. The 16S rRNA sequences of strains BM2, BM4 and BM5 represent a novel subline within the genus in the family . The 16S rRNA gene sequences of strains BM2, BM4 and BM5 were indistinguishable and showed 98.1-87.3 % similarity with other species of the genus . Strain BM2 exhibited relatively high levels of DNA-DNA hybridization with BM4 (87 ± 0.8 %) and BM5 (92 ± 1.2 %). Meanwhile, it showed a low level of DNA-DNA hybridization ( < 30 %) with other closely related species of the genus . The strains showed the typical chemotaxonomic characteristics of the genus , with the presence of menaquinone 8 as the respiratory quinone; the major fatty acids were summed feature 3 (composed of Cω7/Cω6), Cω6 and C. The DNA G+C content of strain BM2 was 69.7 mol%. The polar lipid profile included major amounts of phosphatidylglycerol, phosphatidylcholine and an unknown aminolipid. On the basis of phenotypic and genotypic properties, and phylogenetic distinctiveness, strains BM2, BM4 and BM5 should be classified in a novel species in the genus , for which the name sp. nov. is proposed. The type strain is BM2 ( = KEMB 5401-184 = JCM 30700); reference strains are BM4 ( = JCM 30701) and BM5 ( = JCM 30702).

摘要

从韩国土壤中分离出三株革兰氏染色阳性、过氧化氢酶和氧化酶阳性的球菌或杆状细菌菌株,分别命名为BM2、BM4和BM5。它们对γ射线具有很强的抗性,D10值为9 kGy,但对紫外线C的抗性较弱。菌株BM2、BM4和BM5的16S rRNA序列代表了该科该属内的一个新亚系。菌株BM2、BM4和BM5的16S rRNA基因序列无法区分,与该属其他物种的相似性为98.1 - 87.3%。菌株BM2与BM4(87±0.8%)和BM5(92±1.2%)表现出相对较高水平的DNA - DNA杂交。同时,它与该属其他密切相关物种的DNA - DNA杂交水平较低(<30%)。这些菌株表现出该属典型的化学分类特征,以甲基萘醌8作为呼吸醌;主要脂肪酸为总和特征3(由Cω7/Cω6组成)、Cω6和C。菌株BM2的DNA G + C含量为69.7 mol%。极性脂质谱包括大量的磷脂酰甘油、磷脂酰胆碱和一种未知的氨基脂质。基于表型和基因型特性以及系统发育独特性,菌株BM2、BM4和BM5应被分类为该属的一个新物种,为此提出新物种名称为[具体名称] sp. nov.。模式菌株为BM2(= KEMB 5401 - 184 = JCM 30700);参考菌株为BM4(= JCM 30701)和BM5(= JCM 30702)。

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