Ralph Peter L, Coop Graham
Computational Biology and Bioinformatics, University of Southern California, Los Angeles, California 90089.
Am Nat. 2015 Oct;186 Suppl 1(Suppl 1):S5-23. doi: 10.1086/682948. Epub 2015 Sep 8.
The extent to which populations experiencing shared selective pressures adapt through a shared genetic response is relevant to many questions in evolutionary biology. In this article, we explore how standing genetic variation contributes to convergent genetic responses in a geographically spread population. Geographically limited dispersal slows the spread of each selected allele, hence allowing other alleles to spread before any one comes to dominate the population. When selectively equivalent alleles meet, their progress is substantially slowed, dividing the species range into a random tessellation, which can be well understood by analogy to a Poisson process model of crystallization. In this framework, we derive the geographic scale over which an allele dominates and the proportion of adaptive alleles that arise from standing variation. Finally, we explore how negative pleiotropic effects of alleles can bias the subset of alleles that contribute to the species' adaptive response. We apply the results to the malaria-resistance glucose-6-phosphate dehydrogenase-deficiency alleles, where the large mutational target size makes it a likely candidate for adaptation from deleterious standing variation. Our results suggest that convergent adaptation may be common. Therefore, caution must be exercised when arguing that strongly geographically restricted alleles are the outcome of local adaptation. We close by discussing the implications of these results for ideas of species coherence and the nature of divergence between species.
经历共同选择压力的种群通过共同的遗传反应实现适应的程度,与进化生物学中的许多问题相关。在本文中,我们探讨了现存遗传变异如何在地理分布广泛的种群中促成趋同的遗传反应。地理上有限的扩散减缓了每个被选择等位基因的传播,从而使得其他等位基因在任何一个等位基因占据种群主导地位之前得以传播。当选择性等效的等位基因相遇时,它们的传播速度会大幅减缓,将物种分布范围划分为一个随机镶嵌图案,这可以通过类比结晶的泊松过程模型得到很好的理解。在这个框架下,我们推导出一个等位基因占据主导地位的地理尺度以及源自现存变异的适应性等位基因的比例。最后,我们探讨等位基因的负向多效性效应如何使有助于物种适应性反应的等位基因子集产生偏差。我们将这些结果应用于抗疟疾的葡萄糖 -6-磷酸脱氢酶缺乏等位基因,其较大的突变靶点大小使其很可能是从有害的现存变异中实现适应的候选对象。我们的结果表明趋同适应可能很常见。因此,在认为地理上强烈受限的等位基因是局部适应的结果时必须谨慎。最后,我们讨论了这些结果对物种一致性概念以及物种间分化本质的影响。