SpotCaliper：基于快速小波的斑点检测，具有准确的尺寸估计。

SpotCaliper: fast wavelet-based spot detection with accurate size estimation.

机构信息

Biomedical Imaging Group, École polytechnique fédérale de Lausanne (EPFL), Lausanne CH-1015, Switzerland.

出版信息

Bioinformatics. 2016 Apr 15;32(8):1278-80. doi: 10.1093/bioinformatics/btv728. Epub 2015 Dec 10.

DOI:10.1093/bioinformatics/btv728

PMID:26656569

Abstract

MOTIVATION

SpotCaliper is a novel wavelet-based image-analysis software providing a fast automatic detection scheme for circular patterns (spots), combined with the precise estimation of their size. It is implemented as an ImageJ plugin with a friendly user interface. The user is allowed to edit the results by modifying the measurements (in a semi-automated way), extract data for further analysis. The fine tuning of the detections includes the possibility of adjusting or removing the original detections, as well as adding further spots.

RESULTS

The main advantage of the software is its ability to capture the size of spots in a fast and accurate way.

AVAILABILITY AND IMPLEMENTATION

http://bigwww.epfl.ch/algorithms/spotcaliper/

CONTACT

zsuzsanna.puspoki@epfl.ch

SUPPLEMENTARY INFORMATION

Supplementary data are available at Bioinformatics online.

摘要

动机

SpotCaliper 是一种基于小波的新型图像分析软件，提供了一种快速自动的圆形图案（斑点）检测方案，结合了其大小的精确估计。它被实现为一个带有友好用户界面的 ImageJ 插件。用户可以通过修改测量值（半自动方式）来编辑结果，提取用于进一步分析的数据。检测的微调包括调整或删除原始检测以及添加更多斑点的可能性。