Benavides Mar, Moisander Pia H, Berthelot Hugo, Dittmar Thorsten, Grosso Olivier, Bonnet Sophie
Aix Marseille Université, CNRS/INSU, Université de Toulon, IRD, Mediterranean Institute of Oceanography (MIO) UM 110, 98848, Nouméa, New Caledonia.
Department of Biology, University of Massachusetts Dartmouth, 285 Old Westport Road, North Dartmouth, Massachusetts 02747, United States of America.
PLoS One. 2015 Dec 11;10(12):e0143775. doi: 10.1371/journal.pone.0143775. eCollection 2015.
Dinitrogen (N2) fixation was investigated together with organic matter composition in the mesopelagic zone of the Bismarck (Transect 1) and Solomon (Transect 2) Seas (Southwest Pacific). Transparent exopolymer particles (TEP) and the presence of compounds sharing molecular formulae with saturated fatty acids and sugars, as well as dissolved organic matter (DOM) compounds containing nitrogen (N) and phosphorus (P) were higher on Transect 1 than on Transect 2, while oxygen concentrations showed an opposite pattern. N2 fixation rates (up to ~1 nmol N L-1 d-1) were higher in Transect 1 than in Transect 2, and correlated positively with TEP, suggesting a dependence of diazotroph activity on organic matter. The scores of the multivariate ordination of DOM molecular formulae and their relative abundance correlated negatively with bacterial abundances and positively with N2 fixation rates, suggesting an active bacterial exploitation of DOM and its use to sustain diazotrophic activity. Sequences of the nifH gene clustered with Alpha-, Beta-, Gamma- and Deltaproteobacteria, and included representatives from Clusters I, III and IV. A third of the clone library included sequences close to the potentially anaerobic Cluster III, suggesting that N2 fixation was partially supported by presumably particle-attached diazotrophs. Quantitative polymerase chain reaction (qPCR) primer-probe sets were designed for three phylotypes and showed low abundances, with a phylotype within Cluster III at up to 103 nifH gene copies L-1. These results provide new insights into the ecology of non-cyanobacterial diazotrophs and suggest that organic matter sustains their activity in the mesopelagic ocean.
在俾斯麦海(断面1)和所罗门海(断面2)(西南太平洋)的中层带,对二氮(N₂)固定与有机物质组成进行了研究。断面1的透明胞外聚合物颗粒(TEP)、与饱和脂肪酸和糖类具有相同分子式的化合物的存在以及含氮(N)和磷(P)的溶解有机物(DOM)化合物的含量均高于断面2,而氧浓度则呈现相反的模式。断面1的N₂固定率(高达约1 nmol N L⁻¹ d⁻¹)高于断面2,且与TEP呈正相关,表明固氮菌活性对有机物质存在依赖性。DOM分子式及其相对丰度的多元排序得分与细菌丰度呈负相关,与N₂固定率呈正相关,表明细菌对DOM进行了积极利用并将其用于维持固氮活性。nifH基因序列与α-、β-、γ-和δ-变形菌聚类,包括来自第一、第三和第四簇的代表。克隆文库的三分之一包含与潜在厌氧的第三簇相近的序列,这表明N₂固定部分由可能附着在颗粒上的固氮菌支持。针对三种系统发育型设计了定量聚合酶链反应(qPCR)引物-探针组,结果显示丰度较低,第三簇内的一个系统发育型的nifH基因拷贝数最高可达10³ L⁻¹。这些结果为非蓝藻固氮菌的生态学提供了新的见解,并表明有机物质维持了它们在中层海洋中的活性。