Kemp Dustin W, Rivers Adam R, Kemp Keri M, Lipp Erin K, Porter James W, Wares John P
Odum School of Ecology, University of Georgia, Athens, GA, 30602, United States of America.
US Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598, United States of America.
PLoS One. 2015 Dec 14;10(12):e0143790. doi: 10.1371/journal.pone.0143790. eCollection 2015.
Coral surface mucus layer (SML) microbiota are critical components of the coral holobiont and play important roles in nutrient cycling and defense against pathogens. We sequenced 16S rRNA amplicons to examine the structure of the SML microbiome within and between colonies of the threatened Caribbean reef-building coral Acropora palmata in the Florida Keys. Samples were taken from three spatially distinct colony regions--uppermost (high irradiance), underside (low irradiance), and the colony base--representing microhabitats that vary in irradiance and water flow. Phylogenetic diversity (PD) values of coral SML bacteria communities were greater than surrounding seawater and lower than adjacent sediment. Bacterial diversity and community composition was consistent among the three microhabitats. Cyanobacteria, Bacteroidetes, Alphaproteobacteria, and Proteobacteria, respectively were the most abundant phyla represented in the samples. This is the first time spatial variability of the surface mucus layer of A. palmata has been studied. Homogeneity in the microbiome of A. palmata contrasts with SML heterogeneity found in other Caribbean corals. These findings suggest that, during non-stressful conditions, host regulation of SML microbiota may override diverse physiochemical influences induced by the topographical complexity of A. palmata. Documenting the spatial distribution of SML microbes is essential to understanding the functional roles these microorganisms play in coral health and adaptability to environmental perturbations.
珊瑚表面黏液层(SML)微生物群是珊瑚共生体的关键组成部分,在营养物质循环和抵御病原体方面发挥着重要作用。我们对16S rRNA扩增子进行了测序,以研究佛罗里达群岛受威胁的加勒比造礁珊瑚鹿角珊瑚群体内部和之间的SML微生物组结构。样本取自三个空间上不同的群体区域——最上部(高光照)、下部(低光照)和群体基部——代表了光照和水流不同的微生境。珊瑚SML细菌群落的系统发育多样性(PD)值高于周围海水,低于相邻沉积物。三个微生境中的细菌多样性和群落组成是一致的。蓝细菌、拟杆菌门、α-变形菌纲和变形菌门分别是样本中最丰富的门类。这是首次对鹿角珊瑚表面黏液层的空间变异性进行研究。鹿角珊瑚微生物组的同质性与其他加勒比珊瑚中发现的SML异质性形成对比。这些发现表明,在非应激条件下,宿主对SML微生物群的调节可能会超越由鹿角珊瑚地形复杂性引起的各种物理化学影响。记录SML微生物的空间分布对于理解这些微生物在珊瑚健康和对环境扰动的适应性中所起的功能作用至关重要。