Rahman Safikur, Ali Syed Ausaf, Islam Asimul, Hassan Md Imtaiyaz, Ahmad Faizan
Centre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, New Delhi, 110025, India.
Centre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, New Delhi, 110025, India.
Arch Biochem Biophys. 2016 Feb 1;591:7-17. doi: 10.1016/j.abb.2015.11.035. Epub 2015 Dec 12.
Here we have generated two different denatured states using heat- and guanidinium chloride (GdmCl)-induced denaturations of three disulfide bond free proteins (barstar, cytochrome-c and myoglobin). We have observed that these two denatured states of barstar and myoglobin are structurally and energetically different, for, heat-induced denatured state contains many un-melted residual structure that has a significant amount of secondary and tertiary interactions. We show that structural properties of the denatured state determine the magnitude of the protein stabilization in terms of Gibbs free energy change (ΔGD°) induced by an osmolyte, i.e., the greater the exposed surface area, the greater is the stabilization. Furthermore, we predicted the m-values (ability of osmolyte to fold or unfold proteins) using Tanford's transfer-free energy model for the transfer of proteins to osmolyte solutions. We observed that, for each protein, m-value is comparable with our experimental data in cases of TMAO (trimethylamine-N-oxide) and sarcosine. However, a significant discrepancy between predicted and experimental m-values were observed in the case of glycine-betaine.
在这里,我们通过热诱导和氯化胍(GdmCl)诱导三种无二硫键的蛋白质(芽孢杆菌RNA酶抑制剂、细胞色素c和肌红蛋白)变性,生成了两种不同的变性状态。我们观察到,芽孢杆菌RNA酶抑制剂和肌红蛋白的这两种变性状态在结构和能量上是不同的,因为热诱导变性状态包含许多未熔化的残余结构,这些结构具有大量的二级和三级相互作用。我们表明,变性状态的结构性质决定了渗透剂诱导的蛋白质稳定化程度(以吉布斯自由能变化(ΔGD°)表示),即暴露表面积越大,稳定化程度越高。此外,我们使用坦福德的无转移自由能模型预测了m值(渗透剂使蛋白质折叠或展开的能力),该模型用于将蛋白质转移到渗透剂溶液中。我们观察到,对于每种蛋白质,在三甲胺-N-氧化物(TMAO)和肌氨酸的情况下,m值与我们的实验数据相当。然而,在甘氨酸甜菜碱的情况下,预测的m值与实验m值之间存在显著差异。