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体相水体系中质子扩散的分治型密度泛函紧束缚分子动力学模拟

Divide-and-Conquer-Type Density-Functional Tight-Binding Molecular Dynamics Simulations of Proton Diffusion in a Bulk Water System.

作者信息

Nakai Hiromi, Sakti Aditya Wibawa, Nishimura Yoshifumi

机构信息

Department of Chemistry and Biochemistry, School of Advanced Science and Engineering, Waseda University , Tokyo 169-8555, Japan.

Research Institute for Science and Engineering, Waseda University , Tokyo 169-8555, Japan.

出版信息

J Phys Chem B. 2016 Jan 14;120(1):217-21. doi: 10.1021/acs.jpcb.5b12439. Epub 2016 Jan 5.

Abstract

The process of proton diffusion in liquid water was investigated using molecular dynamics (MD) simulations, and the total energy and atomic forces were evaluated by the divide-and-conquer-type density-functional tight-binding (DC-DFTB) method. The effectiveness of this approach was confirmed by comparing the computational time of water clusters with conventional treatments. The unit cell employed herein, which contained 523 water molecules and 1 excess proton, was moderately large in comparison with those used in previous studies. The reasonable accuracy obtained by using this unit cell was confirmed by examining the temperature fluctuation. The diffusion coefficients for the vehicular and Grotthuss processes were accurately reproduced by the DC-DFTB-MD simulations with the unit cell containing 523 water molecules. Furthermore, the energy barriers were evaluated from the temperature dependence of the diffusion coefficient for each process. The calculated barrier for Grotthuss diffusion was in good agreement with the experimental value.

摘要

利用分子动力学(MD)模拟研究了质子在液态水中的扩散过程,并采用分治型密度泛函紧束缚(DC-DFTB)方法评估了总能量和原子力。通过比较水团簇与传统处理方法的计算时间,证实了该方法的有效性。本文采用的晶胞包含523个水分子和1个过量质子,与先前研究中使用的晶胞相比适中较大。通过检查温度波动,证实了使用该晶胞获得的合理精度。含523个水分子的晶胞的DC-DFTB-MD模拟准确再现了车辆过程和Grotthuss过程的扩散系数。此外,根据每个过程扩散系数的温度依赖性评估了能垒。计算得到的Grotthuss扩散能垒与实验值吻合良好。

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