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二叶式主动脉瓣患者性别特异性基因变异的鉴定

Identification of Gender-Specific Genetic Variants in Patients With Bicuspid Aortic Valve.

作者信息

Dargis Natasha, Lamontagne Maxime, Gaudreault Nathalie, Sbarra Laura, Henry Cyndi, Pibarot Philippe, Mathieu Patrick, Bossé Yohan

机构信息

Centre de recherche de l'Institut universitaire de cardiologie et de pneumologie de Québec (CRIUCPQ), Quebec City, Quebec, Canada.

Centre de recherche de l'Institut universitaire de cardiologie et de pneumologie de Québec (CRIUCPQ), Quebec City, Quebec, Canada; Department of Molecular Medicine, Laval University, Quebec City, Quebec, Canada.

出版信息

Am J Cardiol. 2016 Feb 1;117(3):420-6. doi: 10.1016/j.amjcard.2015.10.058. Epub 2015 Nov 19.

Abstract

Bicuspid aortic valve (BAV) is the most frequent congenital heart defect and has a male predominance of 3 to 1. A large proportion of patients develop valvular and aortic complications. Despite the high prevalence of BAV, its cause and genetic origins remain elusive. The goal of this study was to identify genetic variants associated with BAV. Nine genes previously associated with BAV (NOTCH1, AXIN1, EGFR, ENG, GATA5, NKX2-5, NOS3, PDIA2, and TGFBR2) were sequenced in 48 patients with BAV using the Ion Torrent Personal Genome Machine. Pathogenicity of genetic variants was evaluated with the Combined Annotation Dependent Depletion framework. A selection of 89 variants identified by sequencing or in previous BAV genetic studies was genotyped, and allele frequencies were compared in 323 patients with BAV confirmed at surgery and 584 controls. Analyses were also performed by gender. Nine novel and 19 potentially pathogenic variants were identified by next-generation sequencing and confirmed by Sanger sequencing, but they were not associated with BAV in the case-control population. A significant association was observed between an in silico-predicted benign EGFR intronic variant (rs17290301) and BAV. Analyses performed by gender revealed different variants associated with BAV in men (EGFR rs533525993 and TEX26 rs12857479) and women (NOTCH1 rs61751489, TGFBR2 rs1155705, and NKX2-5 rs2277923). In conclusion, these results constitute the first association between EGFR genetic variants and BAV in humans and support a possible role of gender-specific polymorphisms in the development of BAV.

摘要

二叶式主动脉瓣(BAV)是最常见的先天性心脏缺陷,男性发病率是女性的3倍。很大一部分患者会出现瓣膜和主动脉并发症。尽管BAV的患病率很高,但其病因和遗传起源仍不清楚。本研究的目的是确定与BAV相关的基因变异。使用Ion Torrent个人基因组测序仪对48例BAV患者的9个先前与BAV相关的基因(NOTCH1、AXIN1、EGFR、ENG、GATA5、NKX2-5、NOS3、PDIA2和TGFBR2)进行测序。使用联合注释依赖缺失框架评估基因变异的致病性。对通过测序或先前BAV基因研究鉴定的89个变异进行基因分型,并比较323例手术确诊的BAV患者和584例对照的等位基因频率。还按性别进行了分析。通过下一代测序鉴定并经桑格测序确认了9个新的和19个潜在致病性变异,但在病例对照人群中它们与BAV无关。在计算机预测的良性EGFR内含子变异(rs17290301)与BAV之间观察到显著关联。按性别进行的分析显示,男性(EGFR rs533525993和TEX26 rs12857479)和女性(NOTCH1 rs61751489、TGFBR2 rs1155705和NKX2-5 rs2277923)中与BAV相关的变异不同。总之,这些结果构成了人类中EGFR基因变异与BAV之间的首次关联,并支持性别特异性多态性在BAV发生发展中可能发挥的作用。

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