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本文引用的文献

1
Positively charged residues in DNA-binding domains of structural proteins follow sequence-specific positions of DNA phosphate groups.结构蛋白的DNA结合结构域中的带正电荷残基遵循DNA磷酸基团的序列特异性位置。
J Phys Chem B. 2009 Apr 2;113(13):4242-7. doi: 10.1021/jp810009s.
2
Protein--DNA interactions: reaching and recognizing the targets.蛋白质与DNA的相互作用:定位并识别靶标
J Phys Chem B. 2008 Apr 17;112(15):4741-50. doi: 10.1021/jp076432e. Epub 2008 Mar 22.
3
Molecular dynamics simulations of polyelectrolyte brushes: from single chains to bundles of chains.聚电解质刷的分子动力学模拟:从单链到链束
Langmuir. 2007 Dec 4;23(25):12716-28. doi: 10.1021/la702203c. Epub 2007 Oct 31.
4
Entropy and enthalpy of polyelectrolyte complexation: Langevin dynamics simulations.聚电解质络合的熵与焓:朗之万动力学模拟
J Chem Phys. 2006 Apr 21;124(15):154902. doi: 10.1063/1.2178803.
5
Molecular dynamics simulations of multilayer films of polyelectrolytes and nanoparticles.聚电解质与纳米颗粒多层膜的分子动力学模拟
Langmuir. 2006 May 9;22(10):4629-37. doi: 10.1021/la053444n.
6
Langevin dynamics of semiflexible polyelectrolytes: rod-toroid-globule-coil structures and counterion distribution.半柔性聚电解质的朗之万动力学:棒状-环形-球状-线圈状结构及抗衡离子分布
J Chem Phys. 2005 Aug 15;123(7):074905. doi: 10.1063/1.1940054.
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Soft effective interactions between weakly charged polyelectrolyte chains.
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8
Molecular dynamics simulations of electrostatic layer-by-layer self-assembly.静电层层自组装的分子动力学模拟
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9
Conformations and interactions of star-branched polyelectrolytes.星状支化聚电解质的构象与相互作用。
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聚电解质复合物中竞争性取代的建模。

Modeling competitive substitution in a polyelectrolyte complex.

作者信息

Peng B, Muthukumar M

机构信息

Department of Polymer Science and Engineering, University of Massachusetts Amherst, Amherst, Massachusetts 01003, USA.

出版信息

J Chem Phys. 2015 Dec 28;143(24):243133. doi: 10.1063/1.4936256.

DOI:10.1063/1.4936256
PMID:26723618
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4662678/
Abstract

We have simulated the invasion of a polyelectrolyte complex made of a polycation chain and a polyanion chain, by another longer polyanion chain, using the coarse-grained united atom model for the chains and the Langevin dynamics methodology. Our simulations reveal many intricate details of the substitution reaction in terms of conformational changes of the chains and competition between the invading chain and the chain being displaced for the common complementary chain. We show that the invading chain is required to be sufficiently longer than the chain being displaced for effecting the substitution. Yet, having the invading chain to be longer than a certain threshold value does not reduce the substitution time much further. While most of the simulations were carried out in salt-free conditions, we show that presence of salt facilitates the substitution reaction and reduces the substitution time. Analysis of our data shows that the dominant driving force for the substitution process involving polyelectrolytes lies in the release of counterions during the substitution.

摘要

我们使用链的粗粒化联合原子模型和朗之万动力学方法,模拟了由聚阳离子链和聚阴离子链组成的聚电解质复合物被另一条更长的聚阴离子链侵入的过程。我们的模拟揭示了取代反应在链的构象变化以及侵入链与被取代链争夺共同互补链方面的许多复杂细节。我们表明,侵入链需要比被取代链长得足够多才能实现取代。然而,使侵入链长于某个阈值并不会进一步大幅减少取代时间。虽然大多数模拟是在无盐条件下进行的,但我们表明盐的存在促进了取代反应并缩短了取代时间。对我们数据的分析表明,涉及聚电解质的取代过程的主要驱动力在于取代过程中抗衡离子的释放。