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从墨累河鳕（Maccullochella peelii peelii）分离出的链球菌属X13SY08的基因组序列草图

Draft Genome Sequence of Streptococcus sp. X13SY08, Isolated from Murray Cod (Maccullochella peelii peelii).

作者信息

Liu Yang, Zeng Runying, Weng Boqi, Luo Tuyan, Luo Qin, Xu Liwen

机构信息

Central Laboratory of Fujian Academy of Agricultural Sciences, Fujian, China

State Key Laboratory Breeding Base of Marine Genetic Resource, Third Institute of Oceanography, SOA, Xiamen, China.

出版信息

Genome Announc. 2016 Jan 7;4(1):e01470-15. doi: 10.1128/genomeA.01470-15.

DOI:10.1128/genomeA.01470-15
PMID:26744370
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4706332/
Abstract

Streptococcus sp. X13SY08, isolated from freshwater Murray cod fish, likely presents a novel species of Streptococcus. Here, we present an annotated draft genome sequence of this species, which will improve our understanding of its physiology and pathogenesis.

摘要

从淡水墨累鳕鱼中分离出的链球菌属X13SY08，可能代表一种新型链球菌。在此，我们展示了该物种的注释草图基因组序列，这将增进我们对其生理学和发病机制的理解。

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本文引用的文献

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Int J Syst Evol Microbiol. 2015 Sep;65(9):2903-2907. doi: 10.1099/ijs.0.000351. Epub 2015 May 26.
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Streptococcus loxodontisalivarius sp. nov. and Streptococcus saliviloxodontae sp. nov., isolated from oral cavities of elephants.无乳链球菌唾液亚种和乳链球菌唾液亚种，从大象口腔中分离得到。
Int J Syst Evol Microbiol. 2014 Sep;64(Pt 9):3288-3292. doi: 10.1099/ijs.0.063263-0. Epub 2014 Jul 3.
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Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli.用于产志贺毒素大肠杆菌常规分型、监测和疫情检测的实时全基因组测序
J Clin Microbiol. 2014 May;52(5):1501-10. doi: 10.1128/JCM.03617-13. Epub 2014 Feb 26.
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DBETH: a Database of Bacterial Exotoxins for Human.DBETH：人类细菌外毒素数据库。
Nucleic Acids Res. 2012 Jan;40(Database issue):D615-20. doi: 10.1093/nar/gkr942. Epub 2011 Nov 18.
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VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors.VFDB 2012 更新：关注细菌毒力因子的遗传多样性和分子进化。
Nucleic Acids Res. 2012 Jan;40(Database issue):D641-5. doi: 10.1093/nar/gkr989. Epub 2011 Nov 8.
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PHAST: a fast phage search tool.PHAST：一种快速噬菌体搜索工具。
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W347-52. doi: 10.1093/nar/gkr485. Epub 2011 Jun 14.
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SOAP: short oligonucleotide alignment program.SOAP：短寡核苷酸比对程序。
Bioinformatics. 2008 Mar 1;24(5):713-4. doi: 10.1093/bioinformatics/btn025. Epub 2008 Jan 28.
8
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.RNAmmer：核糖体RNA基因的一致性快速注释
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Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.