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结合经典分子动力学和量子力学方法描述电子激发:类胡萝卜素的案例。

Combining classical molecular dynamics and quantum mechanical methods for the description of electronic excitations: The case of carotenoids.

作者信息

Prandi Ingrid G, Viani Lucas, Andreussi Oliviero, Mennucci Benedetta

机构信息

Dipartimento Di Chimica E Chimica Industriale, University of Pisa, via G. Moruzzi 13, Pisa, I-56124, Italy.

Institute for Fluid Dynamics, Nanoscience and Industrial Mathematics, Universidad Carlos III De Madrid, Av. De La Universidad 30, Leganés, E-28911, Spain.

出版信息

J Comput Chem. 2016 Apr 30;37(11):981-91. doi: 10.1002/jcc.24286. Epub 2016 Jan 8.

Abstract

Carotenoids are important actors both in light-harvesting (LH) and in photoprotection functions of photosynthetic pigment-protein complexes. A deep theoretical investigation of this multiple role is still missing owing to the difficulty of describing the delicate interplay between electronic and nuclear degrees of freedom. A possible strategy is to combine accurate quantum mechanical (QM) methods with classical molecular dynamics. To do this, however, accurate force-fields (FF) are necessary. This article presents a new FF for the different carotenoids present in LH complexes of plants. The results show that all the important structural properties described by the new FF are in very good agreement with QM reference values. This increased accuracy in the simulation of the structural fluctuations is also reflected in the description of excited states. Both the energy order and the different nature of the lowest singlet states are preserved during the dynamics when the new FF is used, whereas an unphysical mixing is found when a standard FF is used.

摘要

类胡萝卜素在光合色素 - 蛋白复合体的光捕获(LH)和光保护功能中都起着重要作用。由于难以描述电子和核自由度之间微妙的相互作用,目前仍缺乏对这一多重作用的深入理论研究。一种可能的策略是将精确的量子力学(QM)方法与经典分子动力学相结合。然而,要做到这一点,精确的力场(FF)是必不可少的。本文提出了一种针对植物LH复合体中不同类胡萝卜素的新的力场。结果表明,新力场描述的所有重要结构特性与量子力学参考值非常吻合。结构波动模拟中这种提高的精度在激发态的描述中也有所体现。当使用新力场时,最低单重态的能量顺序和不同性质在动力学过程中得以保留,而使用标准力场时则会出现非物理混合。

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