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使用靶向新一代测序技术检测视网膜营养不良患者的基因突变

Mutation Detection in Patients with Retinal Dystrophies Using Targeted Next Generation Sequencing.

作者信息

Weisschuh Nicole, Mayer Anja K, Strom Tim M, Kohl Susanne, Glöckle Nicola, Schubach Max, Andreasson Sten, Bernd Antje, Birch David G, Hamel Christian P, Heckenlively John R, Jacobson Samuel G, Kamme Christina, Kellner Ulrich, Kunstmann Erdmute, Maffei Pietro, Reiff Charlotte M, Rohrschneider Klaus, Rosenberg Thomas, Rudolph Günther, Vámos Rita, Varsányi Balázs, Weleber Richard G, Wissinger Bernd

机构信息

Molecular Genetics Laboratory, Institute for Ophthalmic Research, Centre for Ophthalmology, University of Tuebingen, Tuebingen, Germany.

Institute of Human Genetics, Helmholtz Zentrum Muenchen, Neuherberg, Germany.

出版信息

PLoS One. 2016 Jan 14;11(1):e0145951. doi: 10.1371/journal.pone.0145951. eCollection 2016.

Abstract

Retinal dystrophies (RD) constitute a group of blinding diseases that are characterized by clinical variability and pronounced genetic heterogeneity. The different nonsyndromic and syndromic forms of RD can be attributed to mutations in more than 200 genes. Consequently, next generation sequencing (NGS) technologies are among the most promising approaches to identify mutations in RD. We screened a large cohort of patients comprising 89 independent cases and families with various subforms of RD applying different NGS platforms. While mutation screening in 50 cases was performed using a RD gene capture panel, 47 cases were analyzed using whole exome sequencing. One family was analyzed using whole genome sequencing. A detection rate of 61% was achieved including mutations in 34 known and two novel RD genes. A total of 69 distinct mutations were identified, including 39 novel mutations. Notably, genetic findings in several families were not consistent with the initial clinical diagnosis. Clinical reassessment resulted in refinement of the clinical diagnosis in some of these families and confirmed the broad clinical spectrum associated with mutations in RD genes.

摘要

视网膜营养不良(RD)是一组致盲性疾病,其特点是临床变异性大且遗传异质性明显。RD的不同非综合征型和综合征型形式可归因于200多个基因的突变。因此,下一代测序(NGS)技术是识别RD突变最有前景的方法之一。我们使用不同的NGS平台,对一个由89个独立病例和患有各种RD亚型的家庭组成的大型队列进行了筛查。其中50例使用RD基因捕获面板进行突变筛查,47例使用全外显子组测序进行分析,1个家庭使用全基因组测序进行分析。包括34个已知RD基因和2个新的RD基因中的突变在内,检测率达到61%。共鉴定出69个不同的突变,其中包括39个新突变。值得注意的是,几个家庭的基因检测结果与最初的临床诊断不一致。临床重新评估导致其中一些家庭的临床诊断得到细化,并证实了与RD基因突变相关的广泛临床谱。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb21/4713063/083e1cd9d49d/pone.0145951.g001.jpg

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