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非典型p53反应元件核心序列和侧翼序列要求中的A/T间隙耐受性。

A/T gap tolerance in the core sequence and flanking sequence requirements of non-canonical p53 response elements.

作者信息

Cai Bi-He, Chao Chung-Faye, Lin Hwang-Chi, Huang Hua-Ying, Kannagi Reiji, Chen Jang-Yi

机构信息

Department of Biology and Anatomy, National Defense Medical Center, Taipei, Taiwan, Institute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.

Department of Biology and Anatomy, National Defense Medical Center, Taipei, Taiwan.

出版信息

J Biochem. 2016 Jun;159(6):563-72. doi: 10.1093/jb/mvw005. Epub 2016 Jan 27.

DOI:10.1093/jb/mvw005
PMID:26823482
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4892394/
Abstract

The canonical core sequence of the p53 response element, CATG, has a two-base A/T gap. Previously, we found that p53 can also activate a non-canonical four-base A/T gap CATATG core sequence. In this study, we investigated the possible number of A/T bases used by p53 and showed that a six-base A/T gap CATATATG core sequence was the maximum A/T gap in the p53 response element that could be upregulated by p53 and p63. Canonical and non-canonical p53 response elements also have three-base flanking sequences. A/T bases could be substituted by G/C bases, including CACACG and CGTGTG, but not CGCGCG. We found that the SV40 promoter with functional six- and two-base A/T gap core sequences could be activated by TAp63γ and that TAp63γ could upregulate SV40 small and large T antigens expression in COS7 cells. We also found that the distal region of PUMA promoter with functional two six-base A/T gap core sequences could be activated by TAp63γ in 293T cells. These new findings could provide novel rules for the non-canonical p53 family response element and could extend the entire p53 family regulation network.

摘要

p53反应元件的典型核心序列CATG有一个两碱基的A/T间隔。此前,我们发现p53还能激活一个非典型的四碱基A/T间隔CATATG核心序列。在本研究中,我们探究了p53使用的A/T碱基的可能数量,并表明一个六碱基A/T间隔CATATATG核心序列是p53和p63能上调的p53反应元件中的最大A/T间隔。典型和非典型p53反应元件也有三碱基侧翼序列。A/T碱基可被G/C碱基取代,包括CACACG和CGTGTG,但不是CGCGCG。我们发现具有功能性六碱基和两碱基A/T间隔核心序列的SV40启动子可被TAp63γ激活,并且TAp63γ可上调COS7细胞中SV40小T抗原和大T抗原的表达。我们还发现具有功能性两个六碱基A/T间隔核心序列的PUMA启动子远端区域可被293T细胞中的TAp63γ激活。这些新发现可为非典型p53家族反应元件提供新规则,并可扩展整个p53家族调控网络。

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Nucleic Acids Res. 2014 Jun;42(10):6270-85. doi: 10.1093/nar/gku299. Epub 2014 May 13.
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Diverse stresses dramatically alter genome-wide p53 binding and transactivation landscape in human cancer cells.多种应激因素显著改变人类癌细胞中全基因组 p53 结合和转录激活谱。
Nucleic Acids Res. 2013 Aug;41(15):7286-301. doi: 10.1093/nar/gkt504. Epub 2013 Jun 17.
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p53 acts as a co-repressor to regulate keratin 14 expression during epidermal cell differentiation.p53 作为共抑制因子在表皮细胞分化过程中调节角蛋白 14 的表达。
PLoS One. 2012;7(7):e41742. doi: 10.1371/journal.pone.0041742. Epub 2012 Jul 24.
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Pliable DNA conformation of response elements bound to transcription factor p63.转录因子 p63 结合的反应元件的柔韧 DNA 构象。
J Biol Chem. 2012 Mar 2;287(10):7477-86. doi: 10.1074/jbc.M111.315820. Epub 2012 Jan 12.
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7
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