Soukup Alexandra A, Keller Nancy P, Wiemann Philipp
Department of Genetics, University of Wisconsin-Madison, 1550 Linden Drive, Madison, WI, 53706, USA.
Department of Bacteriology, University of Wisconsin-Madison, 1550 Linden Drive, Madison, WI, 53706, USA.
Methods Mol Biol. 2016;1401:149-60. doi: 10.1007/978-1-4939-3375-4_10.
Filamentous fungi are historically known as rich sources for production of biologically active natural products, so-called secondary metabolites. One particularly pharmaceutically relevant chemical group of secondary metabolites is the nonribosomal peptides synthesized by nonribosomal peptide synthetases (NRPSs). As most of the fungal NRPS gene clusters leading to production of the desired molecules are not expressed under laboratory conditions, efforts to overcome this impediment are crucial to unlock the full chemical potential of each fungal species. One way to activate these silent clusters is by overexpressing and deleting global regulators of secondary metabolism. The conserved fungal-specific regulator of secondary metabolism, LaeA, was shown to be a valuable target for sleuthing of novel gene clusters and metabolites. Additionally, modulation of chromatin structures by either chemical or genetic manipulation has been shown to activate cryptic metabolites. Furthermore, NRPS-derived molecules seem to be affected by cross talk between the specific gene clusters and some of these metabolites have a tissue- or developmental-specific regulation. This chapter summarizes how this knowledge of different tiers of regulation can be combined to increase production of NRPS-derived metabolites in fungal species.
丝状真菌历来被认为是生产生物活性天然产物(即所谓的次级代谢产物)的丰富来源。次级代谢产物中一个特别与制药相关的化学基团是非核糖体肽,它由非核糖体肽合成酶(NRPS)合成。由于大多数导致所需分子产生的真菌NRPS基因簇在实验室条件下不表达,克服这一障碍的努力对于释放每个真菌物种的全部化学潜力至关重要。激活这些沉默基因簇的一种方法是过表达和删除次级代谢的全局调节因子。保守的真菌特异性次级代谢调节因子LaeA已被证明是寻找新基因簇和代谢产物的有价值靶点。此外,通过化学或基因操作对染色质结构进行调节已被证明可激活隐性代谢产物。此外,NRPS衍生的分子似乎受到特定基因簇之间串扰的影响,其中一些代谢产物具有组织或发育特异性调节。本章总结了如何将不同层次调节的这些知识结合起来,以增加真菌物种中NRPS衍生代谢产物的产量。