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噬菌体T4的sunY内含子的催化核心。

The catalytic core of the sunY intron of bacteriophage T4.

作者信息

Xu M Q, Shub D A

机构信息

Department of Biological Sciences, State University of New York, Albany 12222.

出版信息

Gene. 1989 Oct 15;82(1):77-82. doi: 10.1016/0378-1119(89)90032-2.

DOI:10.1016/0378-1119(89)90032-2
PMID:2684777
Abstract

The self-splicing sunY intron of bacteriophage T4 shares a common secondary structure with other group I introns. A long open reading frame within the intron is entirely 3' of the structural elements conserved in all group I introns. This catalytic core is the smallest yet described for a self-splicing intron. An internal deletion of 728 nucleotides (nt), leaving 196 nt at the 5' end and 109 nt at the 3' end, allows normal self-splicing. Transcripts terminating 196 nt 3' of the 5' splice site retain catalytic activity.

摘要

噬菌体T4的自我剪接sunY内含子与其他I类内含子具有共同的二级结构。该内含子内的一个长开放阅读框完全位于所有I类内含子中保守的结构元件的3'端。这个催化核心是迄今所描述的自我剪接内含子中最小的。728个核苷酸(nt)的内部缺失,在5'端留下196 nt,在3'端留下109 nt,允许正常的自我剪接。在5'剪接位点3'端196 nt处终止的转录本保留催化活性。

相似文献

1
The catalytic core of the sunY intron of bacteriophage T4.噬菌体T4的sunY内含子的催化核心。
Gene. 1989 Oct 15;82(1):77-82. doi: 10.1016/0378-1119(89)90032-2.
2
Miniribozymes, small derivatives of the sunY intron, are catalytically active.微小核酶是sunY内含子的小衍生物,具有催化活性。
Mol Cell Biol. 1989 Dec;9(12):5480-3. doi: 10.1128/mcb.9.12.5480-5483.1989.
3
Mechanism of 3' splice site selection by the catalytic core of the sunY intron of bacteriophage T4: the role of a novel base-pairing interaction in group I introns.
Genes Dev. 1990 May;4(5):777-88. doi: 10.1101/gad.4.5.777.
4
Spontaneous shuffling of domains between introns of phage T4.噬菌体T4内含子之间结构域的自发重排。
Nature. 1990 Jul 26;346(6282):394-6. doi: 10.1038/346394a0.
5
The inconsistent distribution of introns in the T-even phages indicates recent genetic exchanges.T偶数噬菌体中内含子分布的不一致表明了近期的基因交换。
Nucleic Acids Res. 1989 Jan 11;17(1):301-15. doi: 10.1093/nar/17.1.301.
6
Activation of the catalytic core of a group I intron by a remote 3' splice junction.I类内含子催化核心被远端3'剪接位点激活。
Genes Dev. 1992 Aug;6(8):1373-85. doi: 10.1101/gad.6.8.1373.
7
Genes within genes: independent expression of phage T4 intron open reading frames and the genes in which they reside.基因中的基因:噬菌体T4内含子开放阅读框与其所在基因的独立表达。
Genes Dev. 1988 Dec;2(12B):1791-9. doi: 10.1101/gad.2.12b.1791.
8
Multiple self-splicing introns in bacteriophage T4: evidence from autocatalytic GTP labeling of RNA in vitro.噬菌体T4中的多个自我剪接内含子:体外RNA的自催化GTP标记证据
Cell. 1986 Oct 10;47(1):81-7. doi: 10.1016/0092-8674(86)90368-5.
9
Functional and sequence analysis of splicing defective nrdB mutants of bacteriophage T4 reveal new bases and a new sub-domain required for group I intron self-splicing.噬菌体T4剪接缺陷型nrdB突变体的功能和序列分析揭示了I组内含子自我剪接所需的新碱基和新亚结构域。
Biochim Biophys Acta. 1997 Jan 3;1350(1):89-97. doi: 10.1016/s0167-4781(96)00151-0.
10
The neurospora CYT-18 protein suppresses defects in the phage T4 td intron by stabilizing the catalytically active structure of the intron core.
Cell. 1992 May 1;69(3):483-94. doi: 10.1016/0092-8674(92)90449-m.

引用本文的文献

1
Bacteriophage T4 genome.噬菌体T4基因组。
Microbiol Mol Biol Rev. 2003 Mar;67(1):86-156, table of contents. doi: 10.1128/MMBR.67.1.86-156.2003.
2
Widespread distribution of a group I intron and its three deletion derivatives in the lysin gene of Streptococcus thermophilus bacteriophages.I类内含子及其三种缺失衍生物在嗜热链球菌噬菌体裂解酶基因中的广泛分布。
J Virol. 2000 Jan;74(2):611-8. doi: 10.1128/jvi.74.2.611-618.2000.
3
Methylation interference experiments identify bases that are essential for distinct catalytic functions of a group I ribozyme.
甲基化干扰实验确定了对于I组核酶不同催化功能至关重要的碱基。
EMBO J. 1993 Dec;12(12):4747-54. doi: 10.1002/j.1460-2075.1993.tb06163.x.
4
Evolution of mobile group I introns: recognition of intron sequences by an intron-encoded endonuclease.I类移动内含子的进化:内含子编码的内切核酸酶对内含子序列的识别。
Proc Natl Acad Sci U S A. 1994 Dec 6;91(25):11983-7. doi: 10.1073/pnas.91.25.11983.
5
Requirements for self-splicing of a group I intron from Physarum polycephalum.多头绒泡菌I类内含子自我剪接的要求。
Nucleic Acids Res. 1994 Oct 11;22(20):4315-20. doi: 10.1093/nar/22.20.4315.
6
Reconstitution of a group I intron self-splicing reaction with an activator RNA.用激活RNA重建I组内含子自我剪接反应。
Proc Natl Acad Sci U S A. 1991 Jan 1;88(1):184-8. doi: 10.1073/pnas.88.1.184.
7
Folding of group I introns from bacteriophage T4 involves internalization of the catalytic core.噬菌体T4的I组内含子折叠涉及催化核心的内化。
Proc Natl Acad Sci U S A. 1991 Dec 15;88(24):11105-9. doi: 10.1073/pnas.88.24.11105.