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基于二代测序技术对12例维吾尔族遗传性视网膜疾病先证者的分子诊断

Next-generation sequencing-based molecular diagnosis of 12 inherited retinal disease probands of Uyghur ethnicity.

作者信息

Tajiguli Abulikemu, Xu Mingchu, Fu Qing, Yiming Rouzimaimaiti, Wang Keqing, Li Yumei, Eblimit Aiden, Sui Ruifang, Chen Rui, Aisa Haji Akber

机构信息

The Key Laboratory of Plant Resources and Chemistry of Arid Zone, Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Urumqi, Xinjiang, China 830011.

Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, United States 77030.

出版信息

Sci Rep. 2016 Feb 9;6:21384. doi: 10.1038/srep21384.

Abstract

Inherited retinal disease (IRD) is a category of genetic disorders affecting retina. Understanding the molecular basis of IRD is vital for clinical and genetic classification of patients. Uyghur people is an isolated ethnic group mainly residing in northwestern China with genetic admixture from Europeans and East Asians. The genetic etiology of IRD in this specific population still remains unknown. Here, by next-generation sequencing (NGS), we screened mutations in over 200 known retinal disease genes in a cohort of 12 unrelated Uyghur IRD probands. Out of the 12 probands, six are solved with high confidence, two with low confidence, while the remaining four are unsolved. We identified known disease-causing alleles in this cohort that suggest ancient Uyghur migration and also discovered eight novel disease-associated variants. Our results showed NGS-based mutation screening as a reliable approach for molecular diagnosis. In addition, this approach can also be applied to reveal the genetic history of a specific ethnic group.

摘要

遗传性视网膜疾病(IRD)是一类影响视网膜的遗传性疾病。了解IRD的分子基础对于患者的临床和基因分类至关重要。维吾尔族是一个主要居住在中国西北部的孤立民族,有来自欧洲人和东亚人的基因混合。该特定人群中IRD的遗传病因仍然未知。在这里,通过下一代测序(NGS),我们在一组12名无亲缘关系的维吾尔族IRD先证者中筛选了200多个已知视网膜疾病基因的突变。在这12名先证者中,6名得到了高度可靠的解决,2名得到了低度可靠的解决,而其余4名未得到解决。我们在该队列中鉴定出已知的致病等位基因,这表明古代维吾尔族的迁徙,并且还发现了8个新的疾病相关变体。我们的结果表明基于NGS的突变筛查是一种可靠的分子诊断方法。此外,这种方法还可以用于揭示特定民族的遗传历史。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c67d/4746660/7610a1471d7a/srep21384-f1.jpg

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