• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

一个高度保守的盐桥稳定了对P2X4受体通道功能至关重要的β2,3-折叠的扭结构象。

A Highly Conserved Salt Bridge Stabilizes the Kinked Conformation of β2,3-Sheet Essential for Channel Function of P2X4 Receptors.

作者信息

Zhao Wen-Shan, Sun Meng-Yang, Sun Liang-Fei, Liu Yan, Yang Yang, Huang Li-Dong, Fan Ying-Zhe, Cheng Xiao-Yang, Cao Peng, Hu You-Min, Li Lingyong, Tian Yun, Wang Rui, Yu Ye

机构信息

From the School of Life Sciences and Key Laboratory of Preclinical Study for New Drugs of Gansu Province School of Basic Medical Sciences, Lanzhou University, Lanzhou 730000, China, the Institute of Medical Sciences and Department of Pharmacology and Chemical Biology, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China.

the Institute of Medical Sciences and Department of Pharmacology and Chemical Biology, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China.

出版信息

J Biol Chem. 2016 Apr 8;291(15):7990-8003. doi: 10.1074/jbc.M115.711127. Epub 2016 Feb 10.

DOI:10.1074/jbc.M115.711127
PMID:26865631
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4825005/
Abstract

Significant progress has been made in understanding the roles of crucial residues/motifs in the channel function of P2X receptors during the pre-structure era. The recent structural determination of P2X receptors allows us to reevaluate the role of those residues/motifs. Residues Arg-309 and Asp-85 (rat P2X4 numbering) are highly conserved throughout the P2X family and were involved in loss-of-function polymorphism in human P2X receptors. Previous studies proposed that they participated in direct ATP binding. However, the crystal structure of P2X demonstrated that those two residues form an intersubunit salt bridge located far away from the ATP-binding site. Therefore, it is necessary to reevaluate the role of this salt bridge in P2X receptors. Here, we suggest the crucial role of this structural element both in protein stability and in channel gating rather than direct ATP interaction and channel assembly. Combining mutagenesis, charge swap, and disulfide cross-linking, we revealed the stringent requirement of this salt bridge in normal P2X4 channel function. This salt bridge may contribute to stabilizing the bending conformation of the β2,3-sheet that is structurally coupled with this salt bridge and the α2-helix. Strongly kinked β2,3 is essential for domain-domain interactions between head domain, dorsal fin domain, right flipper domain, and loop β7,8 in P2X4 receptors. Disulfide cross-linking with directions opposing or along the bending angle of the β2,3-sheet toward the α2-helix led to loss-of-function and gain-of-function of P2X4 receptors, respectively. Further insertion of amino acids with bulky side chains into the linker between the β2,3-sheet or the conformational change of the α2-helix, interfering with the kinked conformation of β2,3, led to loss-of-function of P2X4 receptors. All these findings provided new insights in understanding the contribution of the salt bridge between Asp-85 and Arg-309 and its structurally coupled β2,3-sheet to the function of P2X receptors.

摘要

在结构解析前的时代,人们对关键残基/基序在P2X受体通道功能中的作用已有了显著认识。近期P2X受体的结构解析使我们能够重新评估这些残基/基序的作用。残基Arg-309和Asp-85(大鼠P2X4编号)在整个P2X家族中高度保守,且与人P2X受体的功能丧失多态性有关。先前的研究表明它们参与直接的ATP结合。然而,P2X的晶体结构显示这两个残基形成了一个亚基间盐桥,位于远离ATP结合位点的位置。因此,有必要重新评估这个盐桥在P2X受体中的作用。在此,我们提出这个结构元件在蛋白质稳定性和通道门控中起关键作用,而非直接参与ATP相互作用和通道组装。通过结合诱变、电荷交换和二硫键交联,我们揭示了这个盐桥对正常P2X4通道功能的严格要求。这个盐桥可能有助于稳定与该盐桥和α2螺旋结构耦合的β2,3-折叠的弯曲构象。强烈扭结的β2,3对于P2X4受体中头部结构域、背鳍结构域、右鳍状结构域和环β7,8之间的结构域-结构域相互作用至关重要。与β2,3-折叠向α2螺旋的弯曲角度相反或沿其方向进行二硫键交联,分别导致P2X4受体功能丧失和功能增强。进一步在β2,3-折叠之间的连接子中插入具有大侧链的氨基酸或α2螺旋的构象变化,干扰β2,3的扭结构象,导致P2X4受体功能丧失。所有这些发现为理解Asp-85和Arg-309之间的盐桥及其结构耦合的β2,3-折叠对P2X受体功能的贡献提供了新的见解。

相似文献

1
A Highly Conserved Salt Bridge Stabilizes the Kinked Conformation of β2,3-Sheet Essential for Channel Function of P2X4 Receptors.一个高度保守的盐桥稳定了对P2X4受体通道功能至关重要的β2,3-折叠的扭结构象。
J Biol Chem. 2016 Apr 8;291(15):7990-8003. doi: 10.1074/jbc.M115.711127. Epub 2016 Feb 10.
2
Intersubunit physical couplings fostered by the left flipper domain facilitate channel opening of P2X4 receptors.由左鳍状结构域促进的亚基间物理偶联有助于P2X4受体的通道开放。
J Biol Chem. 2017 May 5;292(18):7619-7635. doi: 10.1074/jbc.M116.771121. Epub 2017 Mar 16.
3
Identification of functionally important residues of the rat P2X4 receptor by alanine scanning mutagenesis of the dorsal fin and left flipper domains.通过对背鳍和左鳍状肢结构域进行丙氨酸扫描诱变鉴定大鼠P2X4受体的功能重要残基。
PLoS One. 2014 Nov 14;9(11):e112902. doi: 10.1371/journal.pone.0112902. eCollection 2014.
4
Inherent dynamics of head domain correlates with ATP-recognition of P2X4 receptors: insights gained from molecular simulations.头部结构域的内在动力学与P2X4受体的ATP识别相关:分子模拟获得的见解
PLoS One. 2014 May 30;9(5):e97528. doi: 10.1371/journal.pone.0097528. eCollection 2014.
5
Involvement of the left-flipper-to-dorsal-fin interface of the zebrafish P2X4 receptor in ATP binding and structural rearrangement.斑马鱼P2X4受体的左鳍状肢与背鳍界面在ATP结合和结构重排中的作用。
Neurosci Lett. 2014 Oct 17;582:1-5. doi: 10.1016/j.neulet.2014.08.038. Epub 2014 Aug 29.
6
A conserved residue in the P2X4 receptor has a nonconserved function in ATP recognition.P2X4 受体中的一个保守残基在 ATP 识别中具有非保守功能。
J Biol Chem. 2021 Jan-Jun;296:100655. doi: 10.1016/j.jbc.2021.100655. Epub 2021 Apr 23.
7
Relative motions between left flipper and dorsal fin domains favour P2X4 receptor activation.左鳍和背鳍域之间的相对运动有利于 P2X4 受体的激活。
Nat Commun. 2014 Jun 19;5:4189. doi: 10.1038/ncomms5189.
8
Positively Charged Residues in the Head Domain of P2X4 Receptors Assist the Binding of ATP.P2X4 受体头部结构域中的正电荷残基有助于 ATP 的结合。
J Chem Inf Model. 2020 Feb 24;60(2):923-932. doi: 10.1021/acs.jcim.9b00856. Epub 2020 Jan 14.
9
Gating mechanism of a P2X4 receptor developed from normal mode analysis and molecular dynamics simulations.P2X4 受体门控机制的正常模式分析和分子动力学模拟研究。
Proc Natl Acad Sci U S A. 2012 Mar 13;109(11):4140-5. doi: 10.1073/pnas.1119546109. Epub 2012 Feb 29.
10
Salt bridge switching from Arg290/Glu167 to Arg290/ATP promotes the closed-to-open transition of the P2X2 receptor.盐桥从 Arg290/Glu167 切换到 Arg290/ATP 促进 P2X2 受体的关闭到开放的转变。
Mol Pharmacol. 2013 Jan;83(1):73-84. doi: 10.1124/mol.112.081489. Epub 2012 Oct 5.

引用本文的文献

1
Identification of the molecular determinants of antagonist potency in the allosteric binding pocket of human P2X4.人P2X4变构结合口袋中拮抗剂效力分子决定因素的鉴定。
Front Pharmacol. 2023 Feb 9;14:1101023. doi: 10.3389/fphar.2023.1101023. eCollection 2023.
2
Dynamic recognition of naloxone, morphine and endomorphin1 in the same pocket of µ-opioid receptors.纳洛酮、吗啡和内吗啡肽-1在μ-阿片受体同一口袋中的动态识别
Front Mol Biosci. 2022 Aug 16;9:925404. doi: 10.3389/fmolb.2022.925404. eCollection 2022.
3
The long β2,3-sheets encoded by redundant sequences play an integral role in the channel function of P2X7 receptors.冗余序列编码的长β2,3 片层在 P2X7 受体的通道功能中发挥着重要作用。
J Biol Chem. 2022 Jun;298(6):102002. doi: 10.1016/j.jbc.2022.102002. Epub 2022 Apr 30.
4
Modulation of P2X4 pore closure by magnesium, potassium, and ATP.P2X4 孔关闭的镁、钾和 ATP 的调节。
Biophys J. 2022 Apr 5;121(7):1134-1142. doi: 10.1016/j.bpj.2022.02.038. Epub 2022 Mar 3.
5
Altered allostery of the left flipper domain underlies the weak ATP response of rat P2X5 receptors.左手翼域变构作用导致大鼠 P2X5 受体对 ATP 的反应减弱。
J Biol Chem. 2019 Dec 20;294(51):19589-19603. doi: 10.1074/jbc.RA119.009959. Epub 2019 Nov 14.
6
Mapping a novel positive allosteric modulator binding site in the central vestibule region of human P2X7.在人类 P2X7 的中央前庭区域中映射新型正变构调节剂结合位点。
Sci Rep. 2019 Mar 1;9(1):3231. doi: 10.1038/s41598-019-39771-5.
7
Three Decades of Chloride Intracellular Channel Proteins: From Organelle to Organ Physiology.氯离子细胞内通道蛋白三十年:从细胞器到器官生理学
Curr Protoc Pharmacol. 2018 Mar;80(1):11.21.1-11.21.17. doi: 10.1002/cpph.36.
8
PD-L1 Nanobody Competitively Inhibits the Formation of the PD-1/PD-L1 Complex: Comparative Molecular Dynamics Simulations.PD-L1 纳米抗体竞争性抑制 PD-1/PD-L1 复合物的形成:比较分子动力学模拟。
Int J Mol Sci. 2018 Jul 7;19(7):1984. doi: 10.3390/ijms19071984.
9
Structural insights into the competitive inhibition of the ATP-gated P2X receptor channel.ATP门控P2X受体通道竞争性抑制的结构见解
Nat Commun. 2017 Oct 12;8(1):876. doi: 10.1038/s41467-017-00887-9.
10
Intersubunit physical couplings fostered by the left flipper domain facilitate channel opening of P2X4 receptors.由左鳍状结构域促进的亚基间物理偶联有助于P2X4受体的通道开放。
J Biol Chem. 2017 May 5;292(18):7619-7635. doi: 10.1074/jbc.M116.771121. Epub 2017 Mar 16.

本文引用的文献

1
Photo-switchable tweezers illuminate pore-opening motions of an ATP-gated P2X ion channel.光开关镊子揭示了ATP门控P2X离子通道的孔开放运动。
Elife. 2016 Jan 25;5:e11050. doi: 10.7554/eLife.11050.
2
Structural Insights into Divalent Cation Modulations of ATP-Gated P2X Receptor Channels.二价阳离子对 ATP 门控 P2X 受体通道的调节的结构见解。
Cell Rep. 2016 Feb 2;14(4):932-944. doi: 10.1016/j.celrep.2015.12.087. Epub 2016 Jan 21.
3
Insights into the channel gating of P2X receptors from structures, dynamics and small molecules.从结构、动力学和小分子研究洞察P2X受体的通道门控机制
Acta Pharmacol Sin. 2016 Jan;37(1):44-55. doi: 10.1038/aps.2015.127.
4
P2X3 receptor antagonist in chronic cough.慢性咳嗽中的P2X3受体拮抗剂
Lancet. 2015 Jul 18;386(9990):244. doi: 10.1016/S0140-6736(15)61274-0.
5
A salt bridge linking the first intracellular loop with the C terminus facilitates the folding of the serotonin transporter.连接第一个细胞内环与C端的盐桥促进了血清素转运体的折叠。
J Biol Chem. 2015 May 22;290(21):13263-78. doi: 10.1074/jbc.M115.641357. Epub 2015 Apr 13.
6
P2X3 receptor antagonist (AF-219) in refractory chronic cough: a randomised, double-blind, placebo-controlled phase 2 study.P2X3 受体拮抗剂(AF-219)治疗难治性慢性咳嗽:一项随机、双盲、安慰剂对照的 2 期研究。
Lancet. 2015 Mar 28;385(9974):1198-205. doi: 10.1016/S0140-6736(14)61255-1. Epub 2014 Nov 25.
7
Involvement of the left-flipper-to-dorsal-fin interface of the zebrafish P2X4 receptor in ATP binding and structural rearrangement.斑马鱼P2X4受体的左鳍状肢与背鳍界面在ATP结合和结构重排中的作用。
Neurosci Lett. 2014 Oct 17;582:1-5. doi: 10.1016/j.neulet.2014.08.038. Epub 2014 Aug 29.
8
Conformational flexibility of the agonist binding jaw of the human P2X3 receptor is a prerequisite for channel opening.人P2X3受体激动剂结合钳的构象灵活性是通道开放的先决条件。
Br J Pharmacol. 2014 Nov;171(22):5093-112. doi: 10.1111/bph.12830. Epub 2014 Sep 5.
9
Relative motions between left flipper and dorsal fin domains favour P2X4 receptor activation.左鳍和背鳍域之间的相对运动有利于 P2X4 受体的激活。
Nat Commun. 2014 Jun 19;5:4189. doi: 10.1038/ncomms5189.
10
Inherent dynamics of head domain correlates with ATP-recognition of P2X4 receptors: insights gained from molecular simulations.头部结构域的内在动力学与P2X4受体的ATP识别相关:分子模拟获得的见解
PLoS One. 2014 May 30;9(5):e97528. doi: 10.1371/journal.pone.0097528. eCollection 2014.