Petrovskaya Lada E, Novototskaya-Vlasova Ksenia A, Spirina Elena V, Durdenko Ekaterina V, Lomakina Galina Yu, Zavialova Maria G, Nikolaev Evgeny N, Rivkina Elizaveta M
Shemyakin & Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, ul. Miklukho-Maklaya, 16/10, 117997, Moscow, Russia
Institute of Physicochemical and Biological Problems in Soil Science, Russian Academy of Sciences, Institutskaya str., 2, 142290, Pushchino, Moscow Region, Russia.
FEMS Microbiol Ecol. 2016 May;92(5):fiw046. doi: 10.1093/femsec/fiw046. Epub 2016 Feb 28.
As a result of construction and screening of a metagenomic library prepared from a permafrost-derived microcosm, we have isolated a novel gene coding for a putative lipolytic enzyme that belongs to the hormone-sensitive lipase family. It encodes a polypeptide of 343 amino acid residues whose amino acid sequence displays maximum likelihood with uncharacterized proteins from Sphingomonas species. A putative catalytic serine residue of PMGL2 resides in a new variant of a recently discovered GTSAG sequence in which a Thr residue is replaced by a Cys residue (GCSAG). The recombinant PMGL2 was produced in Escherichia coli cells and purified by Ni-affinity chromatography. The resulting protein preferably utilizes short-chain p-nitrophenyl esters (C4 and C8) and therefore is an esterase. It possesses maximum activity at 45°C in slightly alkaline conditions and has limited thermostability at higher temperatures. Activity of PMGL2 is stimulated in the presence of 0.25-1.5 M NaCl indicating the good salt tolerance of the new enzyme. Mass spectrometric analysis demonstrated that N-terminal methionine in PMGL2 is processed and cysteine residues do not form a disulfide bond. The results of the study demonstrate the significance of the permafrost environment as a unique genetic reservoir and its potential for metagenomic exploration.
通过构建和筛选从永冻层衍生的微观生态系统制备的宏基因组文库,我们分离出了一个编码假定脂解酶的新基因,该酶属于激素敏感脂肪酶家族。它编码一个由343个氨基酸残基组成的多肽,其氨基酸序列与鞘氨醇单胞菌属未鉴定的蛋白质具有最大相似性。PMGL2的假定催化丝氨酸残基存在于最近发现的GTSAG序列的一个新变体中,其中苏氨酸残基被半胱氨酸残基取代(GCSAG)。重组PMGL2在大肠杆菌细胞中产生,并通过镍亲和色谱法纯化。所得蛋白质优先利用短链对硝基苯酯(C4和C8),因此是一种酯酶。它在45°C的微碱性条件下具有最大活性,在较高温度下热稳定性有限。在0.25 - 1.5 M NaCl存在下,PMGL2的活性受到刺激,表明这种新酶具有良好的耐盐性。质谱分析表明,PMGL2中的N端甲硫氨酸被加工,半胱氨酸残基不形成二硫键。研究结果证明了永冻层环境作为独特基因库的重要性及其在宏基因组探索中的潜力。