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俄罗斯当前HIV-1 A亚型毒株中的保守序列在体外可被人工RNA干扰有效靶向。

Conserved sequences in the current strains of HIV-1 subtype A in Russia are effectively targeted by artificial RNAi in vitro.

作者信息

Tchurikov Nickolai A, Fedoseeva Daria M, Gashnikova Natalya M, Sosin Dmitri V, Gorbacheva Maria A, Alembekov Ildar R, Chechetkin Vladimir R, Kravatsky Yuri V, Kretova Olga V

机构信息

Engelhardt Institute of Molecular Biology, Moscow 119334, Russia.

Engelhardt Institute of Molecular Biology, Moscow 119334, Russia.

出版信息

Gene. 2016 May 25;583(1):78-83. doi: 10.1016/j.gene.2016.03.001. Epub 2016 Mar 3.

DOI:10.1016/j.gene.2016.03.001
PMID:26947394
Abstract

Highly active antiretroviral therapy has greatly reduced the morbidity and mortality of AIDS. However, many of the antiretroviral drugs are toxic with long-term use, and all currently used anti-HIV agents generate drug-resistant mutants. Therefore, there is a great need for new approaches to AIDS therapy. RNAi is a powerful means of inhibiting HIV-1 production in human cells. We propose to use RNAi for gene therapy of HIV/AIDS. Previously we identified a number of new biologically active siRNAs targeting several moderately conserved regions in HIV-1 transcripts. Here we analyze the heterogeneity of nucleotide sequences in three RNAi targets in sequences encoding the reverse transcriptase and integrase domains of current isolates of HIV-1 subtype A in Russia. These data were used to generate genetic constructs expressing short hairpin RNAs 28-30-bp in length that could be processed in cells into siRNAs. After transfection of the constructs we observed siRNAs that efficiently attacked the selected targets. We expect that targeting several viral genes important for HIV-1 reproduction will help overcome the problem of viral adaptation and will prevent the appearance of RNAi escape mutants in current virus strains, an important feature of gene therapy of HIV/AIDS.

摘要

高效抗逆转录病毒疗法已大大降低了艾滋病的发病率和死亡率。然而,许多抗逆转录病毒药物长期使用具有毒性,并且所有目前使用的抗HIV药物都会产生耐药突变体。因此,迫切需要新的艾滋病治疗方法。RNA干扰是抑制人类细胞中HIV-1产生的有力手段。我们提议将RNA干扰用于HIV/AIDS的基因治疗。此前我们鉴定了一些靶向HIV-1转录本中几个中度保守区域的新的具有生物活性的小干扰RNA。在此我们分析了俄罗斯目前HIV-1 A亚型分离株逆转录酶和整合酶结构域编码序列中三个RNA干扰靶点的核苷酸序列异质性。这些数据用于构建表达长度为28 - 30个碱基对的短发夹RNA的基因构建体,其可在细胞中加工成小干扰RNA。转染构建体后,我们观察到能有效攻击所选靶点的小干扰RNA。我们期望靶向几个对HIV-1复制重要的病毒基因将有助于克服病毒适应性问题,并防止在当前病毒株中出现RNA干扰逃逸突变体,这是HIV/AIDS基因治疗的一个重要特征。

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1
Conserved sequences in the current strains of HIV-1 subtype A in Russia are effectively targeted by artificial RNAi in vitro.俄罗斯当前HIV-1 A亚型毒株中的保守序列在体外可被人工RNA干扰有效靶向。
Gene. 2016 May 25;583(1):78-83. doi: 10.1016/j.gene.2016.03.001. Epub 2016 Mar 3.
2
Analysis of Variability in HIV-1 Subtype A Strains in Russia Suggests a Combination of Deep Sequencing and Multitarget RNA Interference for Silencing of the Virus.俄罗斯HIV-1 A亚型毒株变异性分析表明,深度测序与多靶点RNA干扰相结合可实现病毒沉默。
AIDS Res Hum Retroviruses. 2017 Feb;33(2):194-201. doi: 10.1089/AID.2016.0088. Epub 2016 Aug 30.
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[Mutation frequencies in HIV-1 subtype-A genome in regions containing efficient RNAi targets].[含有效RNA干扰靶点区域的HIV-1 A亚型基因组中的突变频率]
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The inhibitory efficacy of RNA POL III-expressed long hairpin RNAs targeted to untranslated regions of the HIV-1 5' long terminal repeat.靶向HIV-1 5'长末端重复序列非翻译区的RNA聚合酶III表达的长链发夹RNA的抑制效力。
Oligonucleotides. 2007 Winter;17(4):419-31. doi: 10.1089/oli.2007.0095.
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Lentiviral siRNAs targeting multiple highly conserved RNA sequences of human immunodeficiency virus type 1.靶向人类免疫缺陷病毒1型多个高度保守RNA序列的慢病毒小干扰RNA
Gene Ther. 2005 Jul;12(14):1133-44. doi: 10.1038/sj.gt.3302509.
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Design of extended short hairpin RNAs for HIV-1 inhibition.用于抑制HIV-1的延长型短发夹RNA的设计
Nucleic Acids Res. 2007;35(17):5683-93. doi: 10.1093/nar/gkm596. Epub 2007 Aug 21.
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Inhibition of HIV-1 fusion with small interfering RNAs targeting the chemokine coreceptor CXCR4.用靶向趋化因子共受体CXCR4的小干扰RNA抑制HIV-1融合
Gene Ther. 2004 Dec;11(23):1703-12. doi: 10.1038/sj.gt.3302339.
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Silencing of HIV-1 subtype C primary isolates by expressed small hairpin RNAs targeted to gag.通过靶向gag的表达小发夹RNA沉默HIV-1 C亚型原始分离株
AIDS Res Hum Retroviruses. 2006 May;22(5):401-10. doi: 10.1089/aid.2006.22.401.
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The efficacy of generating three independent anti-HIV-1 siRNAs from a single U6 RNA Pol III-expressed long hairpin RNA.从单个由U6 RNA聚合酶III表达的长发夹RNA产生三种独立的抗HIV-1 siRNA的效果。
PLoS One. 2008 Jul 2;3(7):e2602. doi: 10.1371/journal.pone.0002602.
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Stringent testing identifies highly potent and escape-proof anti-HIV short hairpin RNAs.严格的测试鉴定出了高效且能防止逃逸的抗艾滋病毒短发夹RNA。
J Gene Med. 2009 Jun;11(6):459-67. doi: 10.1002/jgm.1329.

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Six Highly Conserved Targets of RNAi Revealed in HIV-1-Infected Patients from Russia Are Also Present in Many HIV-1 Strains Worldwide.在俄罗斯的HIV-1感染患者中发现的六个RNA干扰高度保守靶点在全球许多HIV-1毒株中也存在。
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