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内体衔接蛋白Tom1的GAT结构域的结构

Structure of the GAT domain of the endosomal adapter protein Tom1.

作者信息

Xiao Shuyan, Ellena Jeffrey F, Armstrong Geoffrey S, Capelluto Daniel G S

机构信息

Protein Signaling Domains Laboratory, Department of Biological Sciences, Biocomplexity Institute, Virginia Tech, Blacksburg, VA 24061, USA; School of Materials and Metallurgy, Inner Mongolia University of Science and Technology, PR China.

Department of Chemistry and Biochemistry, University of Virginia, Charlottesville, VA 22904, USA.

出版信息

Data Brief. 2016 Feb 24;7:344-8. doi: 10.1016/j.dib.2016.02.042. eCollection 2016 Jun.

DOI:10.1016/j.dib.2016.02.042
PMID:26977434
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4781976/
Abstract

Cellular homeostasis requires correct delivery of cell-surface receptor proteins (cargo) to their target subcellular compartments. The adapter proteins Tom1 and Tollip are involved in sorting of ubiquitinated cargo in endosomal compartments. Recruitment of Tom1 to the endosomal compartments is mediated by its GAT domain's association to Tollip's Tom1-binding domain (TBD). In this data article, we report the solution NMR-derived structure of the Tom1 GAT domain. The estimated protein structure exhibits a bundle of three helical elements. We compare the Tom1 GAT structure with those structures corresponding to the Tollip TBD- and ubiquitin-bound states.

摘要

细胞内稳态需要将细胞表面受体蛋白(货物)正确递送至其目标亚细胞区室。衔接蛋白Tom1和Tollip参与内体区室中泛素化货物的分选。Tom1向内体区室的募集是由其GAT结构域与Tollip的Tom1结合结构域(TBD)的结合介导的。在这篇数据文章中,我们报道了Tom1 GAT结构域的溶液核磁共振衍生结构。估计的蛋白质结构呈现出由三个螺旋元件组成的束状结构。我们将Tom1 GAT结构与对应于Tollip TBD结合状态和泛素结合状态的结构进行了比较。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/daa2/4781976/da5ea41a98de/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/daa2/4781976/2c940c8d07bd/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/daa2/4781976/efb876fc1c78/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/daa2/4781976/da5ea41a98de/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/daa2/4781976/2c940c8d07bd/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/daa2/4781976/efb876fc1c78/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/daa2/4781976/da5ea41a98de/gr3.jpg

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1
Structure of the GAT domain of the endosomal adapter protein Tom1.内体衔接蛋白Tom1的GAT结构域的结构
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引用本文的文献

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Dataset from a human-in-the-loop approach to identify functionally important protein residues from literature.来自人机交互方法的数据集,用于从文献中识别功能重要的蛋白质残基。
Sci Data. 2024 Sep 27;11(1):1032. doi: 10.1038/s41597-024-03841-9.
2
Protein Trafficking or Cell Signaling: A Dilemma for the Adaptor Protein TOM1.蛋白质运输还是细胞信号传导:衔接蛋白TOM1面临的困境
Front Cell Dev Biol. 2021 Feb 26;9:643769. doi: 10.3389/fcell.2021.643769. eCollection 2021.
3
Preferential phosphatidylinositol 5-phosphate binding contributes to a destabilization of the VHS domain structure of Tom1.

本文引用的文献

1
Tom1 Modulates Binding of Tollip to Phosphatidylinositol 3-Phosphate via a Coupled Folding and Binding Mechanism.Tom1通过耦合折叠和结合机制调节Tollip与磷脂酰肌醇3-磷酸的结合。
Structure. 2015 Oct 6;23(10):1910-1920. doi: 10.1016/j.str.2015.07.017. Epub 2015 Aug 27.
2
Structural basis for recognition of ubiquitinated cargo by Tom1-GAT domain.Tom1-GAT结构域识别泛素化货物的结构基础。
FEBS Lett. 2005 Oct 10;579(24):5385-91. doi: 10.1016/j.febslet.2005.08.076.
优先结合磷脂酰肌醇 5-磷酸有助于 Tom1 的 VHS 结构域不稳定。
Sci Rep. 2019 Jul 26;9(1):10868. doi: 10.1038/s41598-019-47386-z.