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芳樟醇异构酶,一种存在于嗜芳樟醇陶厄氏菌47Lol中参与厌氧单萜降解的膜锚定酶。

Linalool isomerase, a membrane-anchored enzyme in the anaerobic monoterpene degradation in Thauera linaloolentis 47Lol.

作者信息

Marmulla Robert, Šafarić Barbara, Markert Stephanie, Schweder Thomas, Harder Jens

机构信息

Department of Microbiology, Max Planck Institute for Marine Microbiology, Celsiusstr. 1, D-28359, Bremen, Germany.

Institute for Pharmacy, Department of Pharmaceutical Biotechnology, University of Greifswald, Felix-Hausdorff-Str. 3, D-17487, Greifswald, Germany.

出版信息

BMC Biochem. 2016 Mar 15;17:6. doi: 10.1186/s12858-016-0062-0.

Abstract

BACKGROUND

Thauera linaloolentis 47Lol uses the tertiary monoterpene alcohol (R,S)-linalool as sole carbon and energy source under denitrifying conditions. The conversion of linalool to geraniol had been observed in carbon-excess cultures, suggesting the presence of a 3,1-hydroxyl-Δ(1)-Δ(2)-mutase (linalool isomerase) as responsible enzyme. To date, only a single enzyme catalyzing such a reaction is described: the linalool dehydratase/isomerase (Ldi) from Castellaniella defragrans 65Phen acting only on (S)-linalool.

RESULTS

The linalool isomerase activity was located in the inner membrane. It was enriched by subcellular fractionation and sucrose gradient centrifugation. MALDI-ToF MS analysis of the enriched protein identified the corresponding gene named lis that codes for the protein in the strain with the highest similarity to the Ldi. Linalool isomerase is predicted to have four transmembrane helices at the N-terminal domain and a cytosolic domain. Enzyme activity required a reductant for activation. A specific activity of 3.42 ± 0.28 nkat mg * protein(-1) and a kM value of 455 ± 124 μM were determined for the thermodynamically favored isomerization of geraniol to both linalool isomers at optimal conditions of pH 8 and 35 °C.

CONCLUSION

The linalool isomerase from T. linaloolentis 47Lol represents a second member of the enzyme class 5.4.4.4, next to the linalool dehydratase/isomerase from C. defragrans 65Phen. Besides considerable amino acid sequence similarity both enzymes share common characteristics with respect to substrate affinity, pH and temperature optima, but differ in the dehydratase activity and the turnover of linalool isomers.

摘要

背景

嗜芳樟醇陶厄氏菌47Lol在反硝化条件下利用叔单萜醇(R,S)-芳樟醇作为唯一碳源和能源。在碳过量培养物中观察到芳樟醇向香叶醇的转化,这表明存在一种3,1-羟基-Δ(1)-Δ(2)-突变酶(芳樟醇异构酶)作为负责的酶。迄今为止,仅描述了一种催化此类反应的酶:来自脱芳樟 Castellaniella defragrans 65Phen的芳樟醇脱水酶/异构酶(Ldi),其仅作用于(S)-芳樟醇。

结果

芳樟醇异构酶活性定位于内膜。通过亚细胞分级分离和蔗糖梯度离心对其进行了富集。对富集蛋白的基质辅助激光解吸电离飞行时间质谱(MALDI-ToF MS)分析鉴定出相应的基因lis,该基因编码与Ldi具有最高相似性的菌株中的蛋白质。预测芳樟醇异构酶在N端结构域有四个跨膜螺旋和一个胞质结构域。酶活性需要还原剂来激活。在pH 8和35°C的最佳条件下,测定了香叶醇向两种芳樟醇异构体的热力学有利异构化的比活性为3.42±0.28 nkat mg*蛋白(-1),KM值为455±124 μM。

结论

嗜芳樟醇陶厄氏菌47Lol的芳樟醇异构酶是5.4.4.4酶类的第二个成员,仅次于脱芳樟 Castellaniella defragrans 65Phen的芳樟醇脱水酶/异构酶。除了相当大的氨基酸序列相似性外,这两种酶在底物亲和力、最适pH和温度方面具有共同特征,但在脱水酶活性和芳樟醇异构体的周转率方面有所不同。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e46/4791888/cfb9eeece72c/12858_2016_62_Fig1_HTML.jpg

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