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结直肠癌患者中的MTDH基因变异

MTDH genetic variants in colorectal cancer patients.

作者信息

Gnosa Sebastian, Ticha Ivana, Haapaniemi Staffan, Sun Xiao-Feng

机构信息

Department of Oncology and Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden.

Institute of Pathology, First Faculty of Medicine, Charles University in Prague and General University Hospital in Prague, Prague, Czech Republic.

出版信息

Sci Rep. 2016 Mar 17;6:23163. doi: 10.1038/srep23163.

Abstract

The colorectal carcinogenesis is a complex process encompassing genetic alterations. The oncoprotein AEG-1, encoded by the MTDH gene, was shown previously to be involved in colorectal cancer (CRC). The aim of this study was to determine the frequency and the spectrum of MTDH variants in tumor tissue, and their relationship to clinicopathological variables in CRC patients. The study included tumors from 356 unselected CRC patients. Mutation analysis of the MTDH gene, including coding region and adjacent intronic sequences, was performed by direct DNA sequencing. The corresponding normal colorectal tissue was analyzed in the carriers of exonic variant to confirm germline or somatic origin. We detected 42 intronic variants, where 25 were novel. Furthermore, we found 8 exonic variants of which four, one missense (c.977C > G-germline) and three frameshift mutations (c.533delA-somatic, c.1340dupA-unknown origin, c.1731delA-unknown origin), were novel. In silico prediction analyses suggested four deleterious variants (c.232G > T, c.533delA, c.1340dupA, and c.1731delA). There were no correlations between the MTDH variants and tumor stage, differentiation or patient survival. We described several novel exonic and intronic variants of the MTDH gene. The detection of likely pathogenic truncating mutations and alterations in functional protein domains indicate their clinical significance, although none of the variants had prognostic potential.

摘要

结直肠癌发生是一个涉及基因改变的复杂过程。由MTDH基因编码的癌蛋白AEG-1先前已被证明与结直肠癌(CRC)有关。本研究的目的是确定肿瘤组织中MTDH变异的频率和谱,以及它们与CRC患者临床病理变量的关系。该研究纳入了356例未经选择的CRC患者的肿瘤。通过直接DNA测序对MTDH基因进行突变分析,包括编码区和相邻内含子序列。对携带外显子变异的患者分析其相应的正常结直肠组织,以确认种系或体细胞起源。我们检测到42个内含子变异,其中25个是新发现的。此外,我们发现了8个外显子变异,其中4个是新的,一个错义突变(c.977C>G-种系)和三个移码突变(c.533delA-体细胞,c.1340dupA-起源不明,c.1731delA-起源不明)。计算机预测分析提示有4个有害变异(c.232G>T、c.533delA、c.1340dupA和c.1731delA)。MTDH变异与肿瘤分期、分化或患者生存率之间无相关性。我们描述了MTDH基因的几个新的外显子和内含子变异。尽管没有一个变异具有预后潜力,但检测到可能致病的截短突变和功能蛋白结构域的改变表明了它们的临床意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/815a/4794727/edbbba93a7f7/srep23163-f1.jpg

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