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从乌拉圭本土含羞草属物种根瘤中分离出的新型贪铜菌菌株。

Novel Cupriavidus Strains Isolated from Root Nodules of Native Uruguayan Mimosa Species.

作者信息

Platero Raúl, James Euan K, Rios Cecilia, Iriarte Andrés, Sandes Laura, Zabaleta María, Battistoni Federico, Fabiano Elena

机构信息

Departamento de Bioquímica y Genómica Microbianas, Instituto de Investigaciones Biológicas Clemente Estable, Montevideo, Uruguay

The James Hutton Institute, Invergowrie, Dundee, United Kingdom.

出版信息

Appl Environ Microbiol. 2016 May 16;82(11):3150-3164. doi: 10.1128/AEM.04142-15. Print 2016 Jun 1.

Abstract

UNLABELLED

The large legume genus Mimosa is known to be associated with both alphaproteobacterial and betaproteobacterial symbionts, depending on environment and plant taxonomy, e.g., Brazilian species are preferentially nodulated by Burkholderia, whereas those in Mexico are associated with alphaproteobacterial symbionts. Little is known, however, about the symbiotic preferences of Mimosa spp. at the southern subtropical limits of the genus. In the present study, rhizobia were isolated from field-collected nodules from Mimosa species that are native to a region in southern Uruguay. Phylogenetic analyses of sequences of the 16S rRNA, recA, and gyrB core genome and the nifH and nodA symbiosis-essential loci confirmed that all the isolates belonged to the genus Cupriavidus However, none were in the well-described symbiotic species C. taiwanensis, but instead they were closely related to other species, such as C. necator, and to species not previously known to be symbiotic (or diazotrophic), such as C. basilensis and C. pinatubonensis Selection of these novel Cupriavidus symbionts by Uruguayan Mimosa spp. is most likely due to their geographical separation from their Brazilian cousins and to the characteristics of the soils in which they were found.

IMPORTANCE

With the aim of exploring the diversity of rhizobia associated with native Mimosa species, symbionts were isolated from root nodules on five Mimosa species that are native to a region in southern Uruguay, Sierra del Abra de Zabaleta. In contrast to data obtained in the major centers of diversification of the genus Mimosa, Brazil and Mexico, where it is mainly associated with Burkholderia and Rhizobium/Ensifer, respectively, the present study has shown that all the isolated symbiotic bacteria belonged to the genus Cupriavidus Interestingly, none of nodules contained bacteria belonging to the well-described symbiotic species C. taiwanensis, but instead they were related to other Cupriavidus species such as C. necator and C. pinatubonensis These data suggest the existence of a higher diversity within beta-rhizobial Cupriavidus than was previously suspected, and that Mimosa spp. from Sierra del Abra de Zabaleta, may be natural reservoirs for novel rhizobia.

摘要

未标注

豆科植物含羞草属已知与α-变形菌和β-变形菌共生菌有关,这取决于环境和植物分类,例如巴西的物种优先被伯克霍尔德菌结瘤,而墨西哥的物种则与α-变形菌共生菌有关。然而,对于含羞草属在该属亚热带南部界限的共生偏好知之甚少。在本研究中,从乌拉圭南部一个地区的原生含羞草物种的田间采集根瘤中分离出根瘤菌。对16S rRNA、recA和gyrB核心基因组以及nifH和nodA共生必需位点的序列进行系统发育分析,证实所有分离物都属于贪铜菌属。然而,没有一个属于已充分描述的共生物种台湾贪铜菌,而是与其他物种密切相关,如食酸贪铜菌,以及以前不知道是共生(或固氮)的物种,如巴西贪铜菌和平头山贪铜菌。乌拉圭含羞草属选择这些新型贪铜菌共生菌很可能是由于它们与巴西同类植物的地理隔离以及它们所在土壤的特性。

重要性

为了探索与原生含羞草物种相关的根瘤菌多样性,从乌拉圭南部塞拉德尔阿布拉德萨巴莱塔地区的五种原生含羞草物种的根瘤中分离出共生菌。与在含羞草属的主要多样化中心巴西和墨西哥获得的数据相反,在巴西主要与伯克霍尔德菌相关,在墨西哥主要与根瘤菌/剑菌相关,本研究表明所有分离的共生细菌都属于贪铜菌属。有趣的是,没有一个根瘤含有属于已充分描述的共生物种台湾贪铜菌的细菌,而是与其他贪铜菌物种如食酸贪铜菌和平头山贪铜菌有关。这些数据表明,β-根瘤菌贪铜菌属内的多样性比以前怀疑的要高,并且来自塞拉德尔阿布拉德萨巴莱塔的含羞草属可能是新型根瘤菌的天然储存库。

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