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醛己糖和酮己糖在水溶液和二甲基亚砜溶液中的开链形式:利用分子动力学模拟研究构象特征

Acyclic forms of aldohexoses and ketohexoses in aqueous and DMSO solutions: conformational features studied using molecular dynamics simulations.

作者信息

Plazinski Wojciech, Plazinska Anita, Drach Mateusz

机构信息

Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences, ul. Niezapominajek 8, 30-239 Cracow, Poland.

Department of Biopharmacy, Faculty of Pharmacy, Medical University of Lublin, W. Chodzki Str., 4a, 20-093 Lublin, Poland.

出版信息

Phys Chem Chem Phys. 2016 Apr 14;18(14):9626-35. doi: 10.1039/c6cp00809g.

Abstract

The molecular properties of aldohexoses and ketohexoses are usually studied in the context of their cyclic, furanose or pyranose structures which is due to the abundance of related tautomeric forms in aqueous solution. We studied the conformational features of a complete series of D-aldohexoses (D-allose, D-altrose, D-glucose, D-mannose, D-gulose, d-idose, D-galactose and D-talose) and D-ketohexoses (D-psicose, D-fructose, D-sorbose and D-tagatose) as well as of L-psicose by using microsecond-timescale molecular dynamics in explicit water and DMSO with the use of enhanced sampling methods. In each of the studied cases the preferred conformation corresponded to an extended chain structure; the less populated conformers included the quasi-cyclic structures, close to furanose rings and common for both aldo- and ketohexoses. The orientational preferences of the aldehyde or ketone groups are correlated with the relative populations of anomers characteristic of cyclic aldo- and ketohexoses, respectively, thus indicating that basic features of anomeric equilibria are preserved even if hexose molecules are not in their cyclic forms. No analogous relationship is observed in the case of other structural characteristics, such as the preferences of acyclic molecules to form either the furanose-or pyranose-like structures or maintaining the chair-like geometry of pseudo-pyranose rings.

摘要

己醛糖和己酮糖的分子性质通常在其环状(呋喃糖或吡喃糖)结构的背景下进行研究,这是由于它们在水溶液中存在大量相关的互变异构形式。我们通过在含有显式水和二甲基亚砜(DMSO)的体系中使用微秒级分子动力学并结合增强采样方法,研究了一系列完整的D-己醛糖(D-阿洛糖、D-阿卓糖、D-葡萄糖、D-甘露糖、D-古洛糖、D-艾杜糖、D-半乳糖和D-塔罗糖)、D-己酮糖(D-阿洛酮糖、D-果糖、D-山梨糖和D-塔格糖)以及L-阿洛酮糖的构象特征。在每个研究案例中,优选构象对应于伸展链结构;较少出现的构象包括接近呋喃糖环的准环状结构,这在己醛糖和己酮糖中都很常见。醛基或酮基的取向偏好分别与环状己醛糖和己酮糖特有的异头物相对丰度相关,这表明即使己糖分子不是处于环状形式,异头物平衡的基本特征仍然得以保留。在其他结构特征方面,如无环分子形成呋喃糖或吡喃糖样结构的偏好,或维持假吡喃糖环的椅式几何形状等情况中,未观察到类似的关系。

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