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利用Illumina MiSeq下一代测序技术开发并鉴定26个新的微卫星基因座,用于trochid腹足动物Gibbula divaricata(林奈,1758年)。

Development and characterization of 26 novel microsatellite loci for the trochid gastropod Gibbula divaricata (Linnaeus, 1758), using Illumina MiSeq next generation sequencing technology.

作者信息

López-Márquez Violeta, García-Jiménez Ricardo, Templado José, Machordom Annie

机构信息

Biodiversidad y Biología Evolutiva, Museo Nacional de Ciencias Naturales (MNCN-CSIC) , Madrid , Spain.

Molecular Systematics Lab, Museo Nacional de Ciencias Naturales (MNCN-CSIC) , Madrid , Spain.

出版信息

PeerJ. 2016 Mar 24;4:e1789. doi: 10.7717/peerj.1789. eCollection 2016.

Abstract

In the present study we used the high-throughput sequencing technology Illumina MiSeq to develop 26 polymorphic microsatellite loci for the marine snail Gibbula divaricata. Four to 32 alleles were detected per locus across 30 samples analyzed. Observed and expected heterozygosities ranged from 0.130 to 0.933 and from 0.294 to 0.956, respectively. No significant linkage disequilibrium existed. Seven loci deviated from Hardy-Weinberg equilibrium that could not totally be explained by the presence of null alleles. Sympatric distribution with other species of the genus Gibbula, as G. rarilineata and G. varia, lead us to test the cross utility of the developed markers in these two species, which could be useful to test common biogeographic patterns or potential hybridization phenomena, since morphological intermediate specimens were found.

摘要

在本研究中,我们使用Illumina MiSeq高通量测序技术为海蜗牛Gibbula divaricata开发了26个多态性微卫星位点。在所分析的30个样本中,每个位点检测到4至32个等位基因。观察到的杂合度和期望杂合度分别为0.130至0.933和0.294至0.956。不存在显著的连锁不平衡。7个位点偏离哈迪-温伯格平衡,这不能完全用无效等位基因的存在来解释。与Gibbula属的其他物种(如细纹Gibbula和多变Gibbula)的同域分布,使我们测试所开发标记在这两个物种中的交叉实用性,这对于测试常见的生物地理模式或潜在的杂交现象可能是有用的,因为发现了形态学上的中间标本。

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本文引用的文献

1
ANALYZING TABLES OF STATISTICAL TESTS.
Evolution. 1989 Jan;43(1):223-225. doi: 10.1111/j.1558-5646.1989.tb04220.x.
3
Ecoregion-based conservation planning in the Mediterranean: dealing with large-scale heterogeneity.
PLoS One. 2013 Oct 14;8(10):e76449. doi: 10.1371/journal.pone.0076449. eCollection 2013.
4
Permanent genetic resources added to Molecular Ecology Resources Database 1 August 2012 - 30 September 2012.
Mol Ecol Resour. 2013 Jan;13(1):158-9. doi: 10.1111/1755-0998.12035. Epub 2012 Nov 26.
5
GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update.
Bioinformatics. 2012 Oct 1;28(19):2537-9. doi: 10.1093/bioinformatics/bts460. Epub 2012 Jul 20.
6
Primer3--new capabilities and interfaces.
Nucleic Acids Res. 2012 Aug;40(15):e115. doi: 10.1093/nar/gks596. Epub 2012 Jun 22.
7
genepop'007: a complete re-implementation of the genepop software for Windows and Linux.
Mol Ecol Resour. 2008 Jan;8(1):103-6. doi: 10.1111/j.1471-8286.2007.01931.x.
8
Development of tetranucleotide microsatellite markers for the cushion star, Asterina gibbosa, and cross-species amplification.
Mol Ecol Resour. 2009 Jan;9(1):274-7. doi: 10.1111/j.1755-0998.2008.02267.x. Epub 2008 Oct 30.
9
Larval dispersal and marine population connectivity.
Ann Rev Mar Sci. 2009;1:443-66. doi: 10.1146/annurev.marine.010908.163757.

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