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利用基于实验获得的核磁共振蛋白质结构进行分子动力学模拟,以支持β-淀粉样蛋白二聚体在不对称脂质双分子层表面的结构转变及蛋白质-脂质相互作用的数据。

Data supporting beta-amyloid dimer structural transitions and protein-lipid interactions on asymmetric lipid bilayer surfaces using MD simulations on experimentally derived NMR protein structures.

作者信息

Cheng Sara Y, Chou George, Buie Creighton, Vaughn Mark W, Compton Campbell, Cheng Kwan H

机构信息

Department of Physics, University of Texas at Austin, Austin, TX 78712, USA.

Department of Chemical Engineering, Texas Tech University, Lubbock, TX 79409, USA.

出版信息

Data Brief. 2016 Mar 10;7:658-72. doi: 10.1016/j.dib.2016.03.015. eCollection 2016 Jun.

Abstract

This data article supports the research article entitled "Maximally Asymmetric Transbilayer Distribution of Anionic Lipids Alters the Structure and interaction with Lipids of an Amyloidogenic Protein Dimer Bound to the Membrane Surface" [1]. We describe supporting data on the binding kinetics, time evolution of secondary structure, and residue-contact maps of a surface-absorbed beta-amyloid dimer protein on different membrane surfaces. We further demonstrate the sorting of annular and non-annular regions of the protein/lipid bilayer simulation systems, and the correlation of lipid-number mismatch and surface area per lipid mismatch of asymmetric lipid membranes.

摘要

本数据文章支持题为《阴离子脂质的最大不对称跨膜分布改变与膜表面结合的淀粉样蛋白二聚体的结构及其与脂质的相互作用》的研究文章[1]。我们描述了关于不同膜表面上表面吸附的β-淀粉样二聚体蛋白的结合动力学、二级结构的时间演变以及残基接触图的支持数据。我们进一步展示了蛋白质/脂质双层模拟系统中环形和非环形区域的分类,以及不对称脂质膜的脂质数量错配和每脂质表面积错配的相关性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0ab1/4802547/7188769ffea9/gr1.jpg

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