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先天性心脏病标志物关系模型的建立及其血清标志物与易感基因关联的基因本体功能分析

Establishment of Relational Model of Congenital Heart Disease Markers and GO Functional Analysis of the Association between Its Serum Markers and Susceptibility Genes.

作者信息

Liu Min, Zhao Luosha, Yuan Jiaying

机构信息

Department of Cardiovascular Medicine, The First Affiliated Hospital of Zhengzhou University, No. 1 East Jianshe Road, Zhengzhou 450052, China; Department of Cardiovascular Medicine, Zhengzhou Central Hospital, Zhengzhou University, No. 195 Tongbai Road, Zhengzhou 450007, China.

Department of Cardiovascular Medicine, The First Affiliated Hospital of Zhengzhou University, No. 1 East Jianshe Road, Zhengzhou 450052, China.

出版信息

Comput Math Methods Med. 2016;2016:9506829. doi: 10.1155/2016/9506829. Epub 2016 Mar 16.

Abstract

PURPOSE

The purpose of present study was to construct the best screening model of congenital heart disease serum markers and to provide reference for further prevention and treatment of the disease.

METHODS

Documents from 2006 to 2014 were collected and meta-analysis was used for screening susceptibility genes and serum markers closely related to the diagnosis of congenital heart disease. Data of serum markers were extracted from 80 congenital heart disease patients and 80 healthy controls, respectively, and then logistic regression analysis and support vector machine were utilized to establish prediction models of serum markers and Gene Ontology (GO) functional annotation.

RESULTS

Results showed that NKX2.5, GATA4, and FOG2 were susceptibility genes of congenital heart disease. CRP, BNP, and cTnI were risk factors of congenital heart disease (p < 0.05); cTnI, hs-CRP, BNP, and Lp(a) were significantly close to congenital heart disease (p < 0.01). ROC curve indicated that the accuracy rate of Lp(a) and cTnI, Lp(a) and BNP, and BNP and cTnI joint prediction was 93.4%, 87.1%, and 97.2%, respectively. But the detection accuracy rate of the markers' relational model established by support vector machine was only 85%. GO analysis suggested that NKX2.5, GATA4, and FOG2 were functionally related to Lp(a) and BNP.

CONCLUSIONS

The combined markers model of BNP and cTnI had the highest accuracy rate, providing a theoretical basis for the diagnosis of congenital heart disease.

摘要

目的

本研究旨在构建先天性心脏病血清标志物的最佳筛查模型,为该疾病的进一步防治提供参考。

方法

收集2006年至2014年的文献,采用荟萃分析筛选与先天性心脏病诊断密切相关的易感基因和血清标志物。分别从80例先天性心脏病患者和80例健康对照中提取血清标志物数据,然后利用逻辑回归分析和支持向量机建立血清标志物预测模型及基因本体(GO)功能注释。

结果

结果显示,NKX2.5、GATA4和FOG2是先天性心脏病的易感基因。CRP、BNP和cTnI是先天性心脏病的危险因素(p<0.05);cTnI、hs-CRP、BNP和Lp(a)与先天性心脏病显著相关(p<0.01)。ROC曲线表明,Lp(a)与cTnI、Lp(a)与BNP以及BNP与cTnI联合预测的准确率分别为93.4%、87.1%和97.2%。但支持向量机建立的标志物关联模型检测准确率仅为85%。GO分析表明,NKX2.5、GATA4和FOG2在功能上与Lp(a)和BNP相关。

结论

BNP和cTnI联合标志物模型准确率最高,为先天性心脏病的诊断提供了理论依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3396/4812235/cff3c8de9173/CMMM2016-9506829.001.jpg

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