Tian Jianhui, Nickels Jonathan, Katsaras John, Cheng Xiaolin
The Bredesen Center for Interdisciplinary Research and Graduate Education , 444 Greve Hall, 821 Volunteer Boulevard, Knoxville, Tennessee 37996-3394, United States.
J Phys Chem B. 2016 Aug 25;120(33):8438-48. doi: 10.1021/acs.jpcb.6b02148. Epub 2016 May 10.
Spatial organization within lipid bilayers is an important feature for a range of biological processes. Leaflet compositional asymmetry and lateral lipid organization are just two of the ways in which membrane structure appears to be more complex than initially postulated by the fluid mosaic model. This raises the question of how the phase behavior in one bilayer leaflet may affect the apposing leaflet and how one begins to construct asymmetric model systems to investigate these interleaflet interactions. Here we report on all-atom molecular dynamics simulations (a total of 4.1 μs) of symmetric and asymmetric bilayer systems composed of liquid-ordered (Lo) or liquid-disordered (Ld) leaflets, based on the nanodomain-forming POPC/DSPC/cholesterol system. We begin by analyzing an asymmetric bilayer with leaflets derived from simulations of symmetric Lo and Ld bilayers. In this system, we observe that the properties of the Lo and Ld leaflets are similar to those of the Lo and Ld leaflets in corresponding symmetric systems. However, it is not obvious that mixing the equilibrium structures of their symmetric counterparts is the most appropriate way to construct asymmetric bilayers nor that these structures will manifest interleaflet couplings that lead to domain registry/antiregistry. We therefore constructed and simulated four additional asymmetric bilayer systems by systematically adding or removing lipids in the Ld leaflet to mimic potential density fluctuations. We find that the number of lipids in the Ld leaflet affects its own properties, as well as those of the apposing Lo leaflet. Collectively, the simulations reveal the presence of weak acyl chain interdigitation across bilayer leaflets, suggesting that interdigitation alone does not contribute significantly to the interleaflet coupling in nonphase-separated bilayers of this chemical composition. However, the properties of both leaflets appear to be sensitive to changes in in-plane lipid packing, possibly providing a mechanism for interleaflet coupling by modulating local density and/or curvature fluctuations.
脂质双层内的空间组织是一系列生物过程的重要特征。叶层组成不对称和横向脂质组织只是膜结构比流体镶嵌模型最初假设更为复杂的两种方式。这就提出了一个问题,即一个双层叶层中的相行为如何影响相对的叶层,以及如何开始构建不对称模型系统来研究这些叶层间的相互作用。在此,我们报告了基于形成纳米域的POPC/DSPC/胆固醇系统,对由液相有序(Lo)或液相无序(Ld)叶层组成的对称和不对称双层系统进行的全原子分子动力学模拟(总计4.1微秒)。我们首先分析一个不对称双层,其叶层源自对称Lo和Ld双层的模拟。在这个系统中,我们观察到Lo和Ld叶层的性质与相应对称系统中Lo和Ld叶层的性质相似。然而,将其对称对应物的平衡结构混合是否是构建不对称双层的最合适方法,以及这些结构是否会表现出导致域对齐/反对齐的叶层间耦合,并不明显。因此,我们通过在Ld叶层中系统地添加或去除脂质来模拟潜在的密度波动,构建并模拟了另外四个不对称双层系统。我们发现,Ld叶层中的脂质数量会影响其自身性质以及相对的Lo叶层的性质。总体而言,模拟揭示了跨双层叶层存在弱的酰基链相互交错,这表明在这种化学成分的非相分离双层中,仅相互交错对叶层间耦合的贡献不大。然而,两个叶层的性质似乎都对平面内脂质堆积的变化敏感,这可能通过调节局部密度和/或曲率波动提供了一种叶层间耦合的机制。