Cornell University Department of Physics, 117 Clark Hall, Ithaca, New York, 14853, United States; Johns Hopkins University Department of Molecular Biophysics, 101 Jenkins Hall, 3400 N. Charles Street, Baltimore, Maryland, 21218, United States.
Cornell University Department of Physics, 117 Clark Hall, Ithaca, New York, 14853, United States; Georgia Institute of Technology Partnership for an Advanced Computing Environment, 756 W. Peachtree St. NW, Atlanta, Georgia, 30332, United States.
Chem Phys Lipids. 2020 Oct;232:104972. doi: 10.1016/j.chemphyslip.2020.104972. Epub 2020 Sep 15.
The eukaryotic plasma membrane (PM) exhibits lipid mixing heterogeneities known as lipid rafts. These lipid rafts, the result of liquid-liquid phase separation, can be modeled by coexisting liquid ordered (Lo) and liquid disordered (Ld) domains. Four-lipid component systems with a high-melting lipid, a nanodomain-inducing low-melting lipid, a macrodomain-inducing low-melting lipid, and cholesterol (chol) can give rise to domains of different sizes. These four-component systems have been characterized in experiments, yet there are few studies that model the asymmetric distribution of lipids actually found in the PM. We used molecular dynamics (MD) simulations to analyze the transition from nanoscopic to macroscopic domains in symmetric and in asymmetric model membranes. Using coarse-grained MD simulations, we found that asymmetry promotes macroscopic domain growth in a case where symmetric systems exhibit nanoscopic domains. Also, macroscopic domain formation in symmetric systems is highly dependent on registration of like phases in the cytoplasmic and exoplasmic leaflets. Using united-atom MD simulations, we found that symmetric Lo domains are only slightly more ordered than asymmetric Lo domains. We also found that large Lo domains in our asymmetric systems induce a slight chain ordering in the apposed cytoplasmic regions. The chol fractions of phase-separated Lo and Ld domains of the exoplasmic leaflet were unchanged whether the system was symmetric or asymmetric.
真核细胞质膜(PM)表现出脂质混合不均一性,称为脂质筏。这些脂质筏是液-液相分离的结果,可以通过共存的液体有序(Lo)和液体无序(Ld)区域来模拟。具有高熔点脂质、纳米域诱导低熔点脂质、宏观域诱导低熔点脂质和胆固醇(chol)的四脂质成分系统可以产生不同大小的域。这些四成分系统已在实验中得到了表征,但很少有研究模拟实际存在于 PM 中的脂质的不对称分布。我们使用分子动力学(MD)模拟来分析对称和不对称模型膜中从纳米级到宏观级域的转变。使用粗粒 MD 模拟,我们发现不对称性促进了对称系统中表现为纳米级域的宏观域的生长。此外,对称系统中宏观域的形成高度依赖于细胞质和胞外叶中相似相的注册。使用联合原子 MD 模拟,我们发现对称 Lo 区域仅比不对称 Lo 区域稍微有序。我们还发现,我们的不对称系统中的大 Lo 区域在相邻的细胞质区域中诱导轻微的链有序性。外叶双层相分离的 Lo 和 Ld 域的 chol 分数无论系统是否对称都保持不变。