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定向遗传分化与相对迁移

Directional genetic differentiation and relative migration.

作者信息

Sundqvist Lisa, Keenan Kevin, Zackrisson Martin, Prodöhl Paulo, Kleinhans David

机构信息

Department of Marine Sciences University of Gothenburg SE-405 30 Gothenburg Sweden.

School of Biological Sciences Institute for Global Food Security Queen's University Belfast Belfast BT9 7BL UK.

出版信息

Ecol Evol. 2016 Apr 20;6(11):3461-3475. doi: 10.1002/ece3.2096. eCollection 2016 Jun.

Abstract

Understanding the population structure and patterns of gene flow within species is of fundamental importance to the study of evolution. In the fields of population and evolutionary genetics, measures of genetic differentiation are commonly used to gather this information. One potential caveat is that these measures assume gene flow to be symmetric. However, asymmetric gene flow is common in nature, especially in systems driven by physical processes such as wind or water currents. As information about levels of asymmetric gene flow among populations is essential for the correct interpretation of the distribution of contemporary genetic diversity within species, this should not be overlooked. To obtain information on asymmetric migration patterns from genetic data, complex models based on maximum-likelihood or Bayesian approaches generally need to be employed, often at great computational cost. Here, a new simpler and more efficient approach for understanding gene flow patterns is presented. This approach allows the estimation of directional components of genetic divergence between pairs of populations at low computational effort, using any of the classical or modern measures of genetic differentiation. These directional measures of genetic differentiation can further be used to calculate directional relative migration and to detect asymmetries in gene flow patterns. This can be done in a user-friendly web application called divMigrate-online introduced in this study. Using simulated data sets with known gene flow regimes, we demonstrate that the method is capable of resolving complex migration patterns under a range of study designs.

摘要

了解物种内部的种群结构和基因流动模式对于进化研究至关重要。在种群和进化遗传学领域,遗传分化度量通常用于收集此类信息。一个潜在的问题是,这些度量假定基因流动是对称的。然而,不对称基因流动在自然界很常见,尤其是在由风或水流等物理过程驱动的系统中。由于种群间不对称基因流动水平的信息对于正确解释物种内当代遗传多样性的分布至关重要,因此不应忽视这一点。为了从遗传数据中获取有关不对称迁移模式的信息,通常需要采用基于最大似然或贝叶斯方法的复杂模型,且计算成本往往很高。在此,提出了一种用于理解基因流动模式的更简单、更高效的新方法。该方法能够以较低的计算量,使用任何经典或现代的遗传分化度量来估计种群对之间遗传分化的方向成分。这些遗传分化的方向度量可进一步用于计算方向相对迁移,并检测基因流动模式中的不对称性。这可以通过本研究中介绍的名为divMigrate-online的用户友好型网络应用程序来完成。使用具有已知基因流动模式的模拟数据集,我们证明该方法能够在一系列研究设计下解析复杂的迁移模式。

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