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核酸及其组成单元在原子水平上的益生元合成——融合先进计算与实验的模型和机制

Prebiotic synthesis of nucleic acids and their building blocks at the atomic level - merging models and mechanisms from advanced computations and experiments.

作者信息

Šponer Judit E, Szabla Rafał, Góra Robert W, Saitta A Marco, Pietrucci Fabio, Saija Franz, Di Mauro Ernesto, Saladino Raffaele, Ferus Martin, Civiš Svatopluk, Šponer Jiří

机构信息

Institute of Biophysics, Academy of Sciences of the Czech Republic, Královopolská 135, CZ-612 65 Brno, Czech Republic.

Theoretical Chemistry Group, Institute of Physical and Theoretical Chemistry, Wrocław University of Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland.

出版信息

Phys Chem Chem Phys. 2016 Jul 27;18(30):20047-66. doi: 10.1039/c6cp00670a.

Abstract

The origin of life on Earth is one of the most fascinating questions of contemporary science. Extensive research in the past decades furnished diverse experimental proposals for the emergence of first informational polymers that could form the basis of the early terrestrial life. Side by side with the experiments, the fast development of modern computational chemistry methods during the last 20 years facilitated the use of in silico modelling tools to complement the experiments. Modern computations can provide unique atomic-level insights into the structural and electronic aspects as well as the energetics of key prebiotic chemical reactions. Many of these insights are not directly obtainable from the experimental techniques and the computations are thus becoming indispensable for proper interpretation of many experiments and for qualified predictions. This review illustrates the synergy between experiment and theory in the origin of life research focusing on the prebiotic synthesis of various nucleic acid building blocks and on the self-assembly of nucleotides leading to the first functional oligonucleotides.

摘要

地球上生命的起源是当代科学最引人入胜的问题之一。过去几十年的广泛研究为最早的信息聚合物的出现提供了多样的实验方案,这些聚合物可能构成早期地球生命的基础。与实验并行的是,在过去20年里现代计算化学方法的快速发展促进了计算机模拟工具的使用,以补充实验。现代计算能够提供关于关键益生元化学反应的结构、电子方面以及能量学的独特原子水平见解。其中许多见解无法直接从实验技术中获得,因此计算对于正确解释许多实验和进行合理预测变得不可或缺。本综述阐述了生命起源研究中实验与理论之间的协同作用,重点关注各种核酸构件的益生元合成以及导致首个功能性寡核苷酸的核苷酸自组装。

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